A useful tool to correct genotype calls for individuals in the RILs with the goal to improve genetic mapping
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Genotype-corrector.py
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README.md
__init__.py
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bin_corrected_markers.py
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cal_geno_rate.py
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preprocess_markers.py
vcf2map.py

README.md

Overview of Genotype-corrector

Author Chenyong Miao(freemao)
Haibao Tang (tanghaibao)
James Schnable (jschnable)
Emial cmiao@huskers.unl.edu
License BSD

Description

Genotype-corrector is a useful tool to correct genotype calls for individuals from RILs with the goal to improve genetic mapping.It is based on a sliding window approach to correct noisy genotype calls and complete missing data, which both have a significant impact on the reconstructed maps. Genotype-Corrector is useful for those who want to use SNPs genotype as the population markers to construct genetic mapping using next generation sequencing with relative low sequence coverage.

The effective of Genotype-corrector

Comparison between before and after using Genotype-corrector

Usage

For detailed software usage, please see Genotype-corrector wiki page.