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NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations
NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …
Structural variation caller using third generation sequencing
Fast genome analysis from unassembled short reads
Toolset for SV simulation, comparison and filtering
A tool to benchmark mappers and different parameters within minutes
in the last year
i wanted to try this tool as it seems very promising. I have multiple hundred human samples with SNPs called and wanted to run emeraLD. However…
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