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  1. NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

    C++ 155 25

  2. NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

    C++ 64 6

  3. Structural variation caller using third generation sequencing

    HTML 139 28

  4. Fast genome analysis from unassembled short reads

    JavaScript 61 17

  5. Toolset for SV simulation, comparison and filtering

    C++ 92 17

  6. A tool to benchmark mappers and different parameters within minutes

    HTML 39 8

100 contributions in the last year

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April 2019

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