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Pinned repositories

  1. philres/ngmlr

    NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

    C++ 118 16

  2. Cibiv/NextGenMap

    NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

    C++ 52 5

  3. Sniffles

    Structural variation caller using third generation sequencing

    HTML 104 17

  4. schatzlab/genomescope

    Fast genome analysis from unassembled short reads

    JavaScript 49 13


    Toolset for SV simulation, comparison and filtering

    C++ 66 9

  6. Cibiv/Teaser

    A tool to benchmark mappers and different parameters within minutes

    HTML 36 5

150 contributions in the last year

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Contribution activity

August 2018

Created an issue in statgen/emeraLD that received 6 comments

Seg fault on large VCF

Hi, i wanted to try this tool as it seems very promising. I have multiple hundred human samples with SNPs called and wanted to run emeraLD. However…


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