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executable file 31 lines (26 sloc) 616 Bytes
#!/usr/bin/env cwl-runner
class: Workflow
cwlVersion: v1.0
requirements:
ScatterFeatureRequirement: {}
SubworkflowFeatureRequirement: {}
inputs:
proteins:
type: File[]
label: List of protein sequence files
nucleotides:
type: File[]
label: Matching list of nucleotide sequence files
outputs:
results:
type: File[]
outputSource: alignment/results
steps:
alignment:
run: per_cluster_workflow.cwl
in:
proteins_to_align: proteins
nucleotides: nucleotides
out: [ results ]
scatter: [ proteins_to_align, nucleotides ]
scatterMethod: dotproduct
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