NPscan: scanning genomes for natural product gene clusters
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NPGCquery_meta.txt
README.md
WalshL5_20p99enzymeOnly20160802cluster_info.xlsx
example.R
myFun.NGS.R
myFun.NP.R

README.md

NPscan

NPscan: scanning genomes for natural product gene clusters ####################

The program is designed for predicting natual product gene clusters in fungi genomes. To get a quick idea on how to run NPScan RORA, please follow example.R. For additional details, please look into the code for specific functions inside myFun.NP.R.

#################### File information myFun.NP.R -- contains many functions used in Natural product gene cluster predictions and related problems myFun.NGS.R -- contains some additiona functions required by some functions in myFun.NP.R NPGCquery_meta.txt -- an example meta data file for NPscan, it specifies the genome sequence & annotation files, compiled R binary data files, and identifiers used in the genome annotation file WalshL5_20p99enzymeOnly20160802cluster_info.xlsx -- an example meta data file for RORA.pipeline example.R -- example script with detailed explaination on the key function arguments data -- a folder contains precompiled binary data for 30 genomes, mostly of Aspegillus.

#################### Email: yf.li@interpredgenomics.com