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Fix up README after a review
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clintval committed May 10, 2024
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4 changes: 2 additions & 2 deletions README.md
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Expand Up @@ -36,7 +36,7 @@ Importantly, all point intervals (1-length) reported by this toolkit are 1-based
Collates a pileup of putative structural variant supporting reads.

```console
fgsv SvPileup \
fgsv SvPileup \
--input sample.bam \
--output sample.svpileup
```
Expand Down Expand Up @@ -81,7 +81,7 @@ The output of this tool is a metrics file tabulating the coalesced breakpoints w
Convert the output of `AggregateSvPileup` to BEDPE.

```console
fgsv AggregateSvPileupToBedPE \
fgsv AggregateSvPileupToBedPE \
--input sample.svpileup.aggregate.txt \
--output sample.svpileup.aggregate.bedpe
```
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