topicpy

Python package for topic modelling pre and post processing

Install

This is available trough pip pip install topicpy

Modules

This package consists of multiple modules:

• converter: handels gene name conversions
• geneontology: uses GSEA to perform gene ontologies
• gtex: handle GTEx data
• hsbmpy: handle ouput of hierarchical stochastic block model
• hypergeom: perform hypergeometric tests
• lda: Run sklearn LatenDirichletAllocation with some more parameters
• tableanalyser: study distributions of a RNA-Seq data
• TCGA_files: handle TCGA metadata

Documentation

https://topicpy.readthedocs.io/en/latest/

Test

Run unittest with

python test/test.py

License

See LICENSE