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tracking_reports
asana.pl
aspera_upload.pl
bam-file-count
bam-flags
bam2cfg_sanger.pl
bam2pseudogenome.pl
bam_list_streamer.pl
bamcheck
bamcheck-mousewrapper
bamcheck.c
bcf-fix.pl
build_submission_info.pl
close_vrtrack_library.pl
combineQualmaps.pl
compare-vcf
compress_sqldumps
constructHierarchy.pl
create-primer-sequences
delete_vrtrack_lanes.pl
density.R
disk_usage.pl
fake-samples
file-exists
fill-aa
fill-an-ac
fill-fs
fill-ref-md5
fill-rsIDs
generateIndividualSamplesMap.pl
genotype_check_rerun.pl
get_snp_consequences.pl
git-proxy-squid
hapmap2bin
insert_site_plot
lane-path
lane_bams.pl
lift-over
load_qctracking.pl
load_submissions_vrtrack.pl
load_vrtrack_allocations.pl
load_vrtrack_individuals.pl
make_indel_mask.pl
manytabs-to-vcf
maqclean
merge-vcf
minimal_vr_submission.pl
minimalsubmission.pl
ped2snp
pileup-rmdup
plot-bamcheck
plot-bamcheck-2012-02-11
pro_load.pl
process_bams
processed_flags.pl
qcall-to-vcf
query-vcf
ref-stats
release_lanes.pl
release_platforms.pl
reorderXML.pl
reset_lane.pl
rna_seq_expression
run-beagle
run-impute2
run-mpileup
run-pipeline
run-release
run-retroseq
runtime-stats
sam2vcf.pl
sample_id_mapping
setup-snps-pipeline
stats-file-output
submit_era_xml.pl
tab-to-vcf
topbot-to-fwd-strand
track_to_si.pl
tradis_analysis
tweak-lane
uk10k_genotype_file_maker.pl
unmap_lanes.pl
update-vrtrack-schema
updateDataDirectory10
update_ctcf_track.sh
update_db_vrpipe.sh
update_db_vrtrack.sh
update_g1k_track.sh
update_kuusamo_track.sh
update_mouse_track.sh
update_orcades_track.sh
update_parkinsons_track.sh
update_softwarevertres.pl
update_uk10k_cohort_track.sh
update_uk10k_neuro_track.sh
update_uk10k_obesity_track.sh
update_uk10k_rare_track.sh
update_vbseq_track.sh
update_vrmeta.pl
update_vrtrack.pl
update_vrtrack_cerevisiae_wgs.sh
update_vrtrack_human_wes.sh
update_vrtrack_human_wgs.sh
update_vrtrack_mouse_wes.sh
update_vrtrack_mouse_wgs.sh
validateXML.pl
variant_effect_predictor.pl
vcf-annotate
vcf-beagle
vcf-compare
vcf-concat
vcf-consensus
vcf-convert
vcf-filter
vcf-fix-ploidy
vcf-impute2
vcf-indel-stats
vcf-isec
vcf-merge
vcf-phased-join
vcf-query
vcf-rmdup
vcf-shuffle-cols
vcf-sort
vcf-stats
vcf-subset
vcf-subset-positions
vcf-tstv
vcf-validator
vcf2consequences
vcf2consequences_lsf
vcf2consequences_vep
vcfutils.pl
vr-wrapper
vr_uk10k_stats.pl
vrtrack_import_bams.pl
vrtrack_individual_supplier_name
vrtracking_tool
weekly_new_lane_report
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