Global Alliance for Genomics and Health

Repositories

• htsget-refserver

  Reference server implementation for the GA4GH HTSget API standard.
  Go 0 3 0 1 Updated May 29, 2020

• gatk

  Forked from broadinstitute/gatk

  Official code repository for GATK versions 4 and up
  Java BSD-3-Clause 341 0 0 0 Updated May 29, 2020

• gh-openapi-docs

  Package for building OpenAPI schema docs and UI for gh-pages
  JavaScript Apache-2.0 2 2 10 0 Updated May 23, 2020

• data-repository-service-schemas

  A repository for the schemas used for the Data Repository Service.
  Python Apache-2.0 34 31 30 6 Updated May 19, 2020

• refget-loader

  Schedule the processing of ENA sequences and upload to S3 public dataset

  ga4gh refget
  Python 0 1 0 0 Updated May 19, 2020

• workflow-execution-service-schemas

  The WES API is a standard way to run and manage portable workflows.

  workflow wdl ga4gh cwl
  Python Apache-2.0 19 47 36 2 Updated May 10, 2020

• vr-spec

  Extensible specification for representing and uniquely identifying biological sequence variation

  bioinformatics genomics variation
  Makefile Apache-2.0 16 38 30 (2 issues need help) 0 Updated May 8, 2020

• ga4gh-registry

  Implementation registry service for cataloguing implementations of GA4GH standards
  Java Apache-2.0 1 3 0 1 Updated May 7, 2020

• large-scale-genomics-wiki

  Homepage for the Large Scale Genomics Work Stream
  1 0 0 0 Updated May 5, 2020

• TASC

  TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used together conveniently.

  harmonisation technical-alignment
  3 2 10 0 Updated May 4, 2020

• vr-python

  GA4GH Variation Representation Python Implementation

  bioinformatics genomics ga4gh
  Jupyter Notebook Apache-2.0 4 14 14 (1 issue needs help) 0 Updated Apr 27, 2020

• refget-cloud

  AWS serverless implementation of the refget service

  ga4gh refget
  Python Apache-2.0 0 2 0 0 Updated Apr 21, 2020

• va-spec

  An information model for representing variant annotations.
  0 1 63 (1 issue needs help) 0 Updated Apr 16, 2020

• benchmarking-tools

  Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls

  benchmarking genomics standardization ga4gh reference-materials genome-sequencing variant-calls
  HTML Apache-2.0 29 114 6 0 Updated Apr 7, 2020

• tool-registry-service-schemas

  APIs for discovering genomics tools, their metadata and their containers

  api workflow tool wdl ga4gh cwl
  Shell Apache-2.0 13 19 5 0 Updated Apr 6, 2020

• data-security
  6 11 1 2 Updated Mar 30, 2020

• tool-registry-validator

  Used to validate APIs that implement https://github.com/ga4gh/tool-registry-schemas

  validator ga4gh tool-registry
  Python 2 3 3 0 Updated Feb 28, 2020

• w3id.org

  Forked from perma-id/w3id.org

  Forwarding links and rewrite rules for w3id.org
  HTML 539 2 0 0 Updated Feb 28, 2020

• htsget-compliance

  Compliance testing for htsget deployments
  Python Apache-2.0 2 1 0 1 Updated Feb 14, 2020

• task-execution-schemas
  Apache-2.0 17 40 20 5 Updated Feb 5, 2020

• ga4gh-copyright-policy
  2 0 0 0 Updated Feb 5, 2020

• approval-tracker

  GitHub repository for tracking the progress of specification approval
  0 2 2 0 Updated Jan 23, 2020

• mme-apis

  Documentation for the MatchmakerExchange APIs
  HTML 15 29 33 (1 issue needs help) 2 Updated Jan 10, 2020

• cloud-interop-ui

  Manage Cloud interoperability test plugins and schedules through web interface

  react workflow expressjs ga4gh
  JavaScript Apache-2.0 0 0 1 0 Updated Dec 12, 2019

• standards-schema

  A schema for describing GA4GH Standards
  HTML 0 0 0 0 Updated Nov 6, 2019

• refget-compliance-suite

  Repository for the Google Summer of Code for the Reference Retrieval API

  ga4gh gsoc-2018 retrieval-api
  Python Apache-2.0 3 6 0 3 Updated Oct 21, 2019

• ga4gh-drs-client

  Retrieve omics data and metadata from DRS-compliant web services
  Python MIT 0 2 0 0 Updated Oct 9, 2019

• cloud-interop-testing

  Interoperable execution of workflows using GA4GH APIs

  workflow wdl ga4gh cwl
  Python Apache-2.0 8 9 31 1 Updated Oct 5, 2019

• duri
  1 2 0 0 Updated May 31, 2019

• ga4gh-consent-policy
  Apache-2.0 2 2 3 0 Updated Mar 26, 2019