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I'm running acorss issues converting some of the hgvs codes to ref and alt alleles. I've ran into one variant specifically which is causing problems (NM_005559.3(LAMA1):c.2988_2989delA) as this doesn't appear to be a valid notation. I'm discussing this with Orion and François via email currently. Will report back here with any updates.
Several errors were present, most caused by flipped strand in the HGVS notation in the source manuscripts. Several others were incorrect positions in the underlying manuscripts, resulting in fixed positions.
Additionally, the start position previously listed in the test data was incorrectly 1-based instead of 0-based.
The text was updated successfully, but these errors were encountered:
As @Relequestual mentioned in #105:
Several errors were present, most caused by flipped strand in the HGVS notation in the source manuscripts. Several others were incorrect positions in the underlying manuscripts, resulting in fixed positions.
Additionally, the start position previously listed in the test data was incorrectly 1-based instead of 0-based.
The text was updated successfully, but these errors were encountered: