diff --git a/validation/models.yaml b/validation/models.yaml index 54ec9253..91be8488 100644 --- a/validation/models.yaml +++ b/validation/models.yaml @@ -1,19 +1,19 @@ Number: - - + - in: type: Number value: 55 out: ga4gh_serialize: '{"type":"Number","value":55}' Gene: - - + - in: gene_id: ncbigene:384 type: Gene out: ga4gh_serialize: '{"gene_id":"ncbigene:384","type":"Gene"}' SimpleInterval: - - + - in: end: 44908822 start: 44908821 @@ -262,7 +262,7 @@ Haplotype: ga4gh_digest: i8owCOBHIlRCPtcw_WzRFNTunwJRy99- ga4gh_identify: ga4gh:VH.i8owCOBHIlRCPtcw_WzRFNTunwJRy99- ga4gh_serialize: '{"members":["-kUJh47Pu24Y3Wdsk1rXEDKsXWNY-68x","Z_rYRxpUvwqCLsCBO3YLl70o2uf9_Op1"],"type":"Haplotype"}' -CopyNumber: +AbsoluteCopyNumber: - name: ">=3 copies APOE" in: copies: @@ -270,13 +270,25 @@ CopyNumber: type: IndefiniteRange value: 3 subject: - gene_id: ncbigene:384 + gene_id: ncbigene:348 + type: Gene + type: AbsoluteCopyNumber + out: + ga4gh_digest: 5DNZrhIFslE6Eeo0CsDyQQERR6x7v9OE + ga4gh_identify: ga4gh:VAC.5DNZrhIFslE6Eeo0CsDyQQERR6x7v9OE + ga4gh_serialize: '{"copies":{"comparator":">=","type":"IndefiniteRange","value":3},"subject":{"gene_id":"ncbigene:348","type":"Gene"},"type":"AbsoluteCopyNumber"}' +RelativeCopyNumber: + - name: "Low-level copy gain of BRCA1" + in: + relative_copy_class: low-level gain + subject: + gene_id: ncbigene:348 type: Gene - type: CopyNumber + type: RelativeCopyNumber out: - ga4gh_digest: xksSWn--_z28Qaj-Udlhot4OKqYGkywy - ga4gh_identify: ga4gh:VCN.xksSWn--_z28Qaj-Udlhot4OKqYGkywy - ga4gh_serialize: '{"copies":{"comparator":">=","type":"IndefiniteRange","value":3},"subject":{"gene_id":"ncbigene:384","type":"Gene"},"type":"CopyNumber"}' + ga4gh_digest: CUf7xZJd36mapcm0h3cOZR8kjM_Aj4UV + ga4gh_identify: ga4gh:VRC.CUf7xZJd36mapcm0h3cOZR8kjM_Aj4UV + ga4gh_serialize: '{"relative_copy_class":"low-level gain","subject":{"gene_id":"ncbigene:348","type":"Gene"},"type":"RelativeCopyNumber"}' Text: - in: