Jenkins scripts for testing Galaxy tool repos
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
.gitignore
Dockerfile
README.md
arguments.py
jenkins-script.sh
test-repo.py

README.md

Galaxy Tool testing in Jenkins

Jenkins scripts for testing Galaxy tool repositories

Setup

  1. (Optional) Build a jenkins image (based on https://github.com/jenkinsci/docker) using the supplied Dockerfile.
  2. Configure security and add a new free-style project in jenkins.
  3. Add your tool-repo to jenkins (Bitbucket and Github work fine.)
  4. Make sure that you have .shed.yml files for the tools you want to test. Add an additional section that specifies your test targets in the .shed.yml.
  5. Modify jenkins.sh to suit your needs and run it in your new project.
  6. Download jenkins.sh and execute it in your project.
  7. Publish JUnit reports from reports/*.xml
  8. Publish HTML reports from ${WORKSPACE}/reports/${BUILD_NUMBER}/, index.html
  9. Profit, from your ease-of-mind that all code of your tools are tested automatically.

Known Issues

TODO

  • Convert to build.xml or similar (something easily wget/curl-able)

Galaxy Repository Pushing from GitHub to the ToolShed