This Ansible role is for automated installation of tools from a Tool Shed into Galaxy.
When run, this role will create an execution environment, install
ephemeris and invoke the
shed-install command to install desired tools into Galaxy. The list of tools to
install is provided in
To use the role, you need to create a playbook and include the role in it. A sample playbook is available here that will get you up and running in minutes.
Only one of the two variables is requried (if both are set, the API key takes precedence and a bootstrap user is not created):
galaxy_tools_api_key: the Galaxy API key for an admin user on the target Galaxy instance (not required if the bootstrap user is being created)
galaxy_tools_admin_user_password: a password for the Galaxy bootstrap user (required only if
galaxy_install_bootstrap_uservariable is set)
defaults/main.yml for the available variables and their defaults.
Control flow variables
The following variables can be set to either
no to indicate if the
given part of the role should be executed:
yes) whether or not to run the tools installation script
no) whether or not to create a bootstrap Galaxy admin user
no) whether or not to delete a bootstrap Galaxy admin user