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0.9.1.dev0

0.9.0 (2018-05-23)

0.8.0 (2017-12-29)

  • Many new documentation enhancements (thanks to @rhpvorderman, and others)
  • rename of shed-install to shed-tools and add a new --latest and --revision argument (thanks to @rhpvorderman)
  • many fixes and new tests by (thanks to @mvdbeek)
  • Parallelization of run-data-managers (thanks to @rhpvorderman)
  • run-data-managers now uses more advanced templating for less repetitive input yamls (thanks to @rhpvorderman)
  • run-data-managers now checks if a genome index is already present before running the data manager (thanks to @rhpvorderman)
  • ephemeris will now use https by default instead of http (thanks to @bgruening)

0.7.0 (2017-06-27)

  • Many new documentation enhancements (thanks to @rhpvorderman, @erasche, and others) - docs are now published to https://readthedocs.org/projects/ephemeris/.
  • Fix problem with empty list options related to running data managers (thanks to @rhpvorderman).
  • Enable data managers to run with API keys (thanks to @rhpvorderman).
  • Add sleep command to wait for a Galaxy API to become available (thanks to @erasche).
  • Preserve readable order of keys while processing tool lists (thanks to @drosofff).

0.6.1 (2017-04-17)

  • Add Python 2 and 3 testing for all scripts against galaxy-docker-stable along with various refactoring to reduce code duplication and Python 3 fixes. #36

0.6.0 (2017-04-10)

  • Add new connection options for setting up data libraries.

0.5.1 (2017-04-07)

  • Fix new run-data-managers CLI entrypoint.

0.5.0 (2017-04-06)

  • Add run-data-managers tool to trigger DM with multiple values and in order. #30
  • The workflow install tool now supports a directory of workflows. #27
  • enable global options in a tool yaml files, like install_resolver_dependencies: true #26
  • Mention mimum required galaxy versions. #23 (thanks to @mvdbeek)

0.4.0 (2016-09-07)

  • Be more generic in determining a server time-out (thanks to @afgane).
  • Get tool list entrypoint and improvements (thanks to @mvdbeek).
  • Rename tool_panel_section_name to tool_panel_section_label like ansible-galaxy-tools (thanks to @nturaga).
  • Add missing file tool_list.yaml.sample (thanks to @nturaga).

0.3.0 (2016-08-26)

  • More robust shed-install script, install dependencies by default, improve logging (thanks to @mvdbeek).

0.2.0 (2016-08-15)

  • Add tool generate a tool list from a Galaxy workflow file (thanks to @drosofff).
  • Fix various code quality issues including adding beta support for Python 3 (thanks in part to @mvdbeek).

0.1.0 (2016-06-15)