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# Setting install_resolver_dependencies to True will use Conda.
# This has been disabled to reduce the size of the archive.
tools:
- name: 'suite_metaphlan2'
owner: 'iuc'
tool_panel_section_label: 'MetaPhlAn2'
- name: 'suite_humann2'
owner: 'iuc'
tool_panel_section_label: 'HUMAnN2'
- name: 'combine_metaphlan2_humann2'
owner: 'bebatut'
tool_panel_section_label: 'Combine MetaPhlAn2 and HUMAnN2'
- name: suite_mothur
owner: iuc
tool_panel_section_label: "Mothur"
# this version of Krona saves some annoying file conversion steps from mothur output files
- name: krona_text
owner: saskia-hiltemann
tool_panel_section_label: "Metagenomic Analysis"
- name: tabular_to_fasta
owner: devteam
revisions:
- 0b4e36026794
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fasta_to_tabular
owner: devteam
revisions:
- 7e801ab2b70e
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: tabular_to_fastq
owner: devteam
revisions:
- b334cd1095ea
tool_panel_section_id: convert # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_to_tabular
owner: devteam
revisions:
- bc9269529e88
tool_panel_section_id: convert # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_to_fasta
owner: devteam
revisions:
- 04614cf6ed39
tool_panel_section_id: convert # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: subtract_query
owner: devteam
revisions:
- 5f6ebef89722
tool_panel_section_id: group # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: trim_galore
owner: bgruening
revisions:
- f1e71aeaa923
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastqc
owner: devteam
revisions:
- 3fdc1a74d866
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_paired_end_joiner
owner: devteam
revisions:
- 6a7f5da7c76d
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: pear
owner: iuc
revisions:
- 581e52f03c5d
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: trimmomatic
owner: pjbriggs
revisions:
- f8a9a5eaca8a
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: short_reads_trim_seq
owner: devteam
revisions:
- f17a1585733b
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: short_reads_figure_score
owner: devteam
revisions:
- b52b9c7aabd9
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_quality_boxplot
owner: devteam
revisions:
- e359ce20fbd9
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_quality_converter
owner: devteam
revisions:
- b87c74b61d81
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_quality_filter
owner: devteam
revisions:
- 57adb07cccfc
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_artifacts_filter
owner: devteam
revisions:
- c8808979ba33
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_barcode_splitter
owner: devteam
revisions:
- c5300ff2aa1e
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_clipper
owner: devteam
revisions:
- 2fe2d2b9e8e4
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_collapser
owner: devteam
revisions:
- 13c2d9e8c6d5
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_nucleotides_distribution
owner: devteam
revisions:
- 63d6e2daad48
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_quality_statistics
owner: devteam
revisions:
- c2af34024061
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_renamer
owner: devteam
revisions:
- d7bce63e6e09
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_reverse_complement
owner: devteam
revisions:
- 5bd826723d61
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastx_trimmer
owner: devteam
revisions:
- d77c9c6ecf68
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_combiner
owner: devteam
revisions:
- 94306bdd58f7
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_filter
owner: devteam
revisions:
- b957f55f3955
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_manipulation
owner: devteam
revisions:
- 5d1e9e13e8db
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_groomer
owner: devteam
revisions:
- 1298445c852b
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_masker_by_quality
owner: devteam
revisions:
- 5a7b5751617b
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_paired_end_splitter
owner: devteam
revisions:
- c549e99026db
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_stats
owner: devteam
revisions:
- daaf552153fe
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_trimmer
owner: devteam
revisions:
- 0b9feb0ed628
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fastq_trimmer_by_quality
owner: devteam
revisions:
- 1cdcaf5fc1da
tool_panel_section_label: 'NGS: QC and manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_correct_gc_bias
owner: bgruening
revisions:
- 8f0137a68f02
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_compute_gc_bias
owner: bgruening
revisions:
- 6a056fb2b9c1
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_bigwig_compare
owner: bgruening
revisions:
- 18f46b571982
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_plot_correlation
owner: bgruening
revisions:
- b3589208f673
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_plot_fingerprint
owner: bgruening
revisions:
- e94df7973bb0
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_plot_pca
owner: bgruening
revisions:
- 610bbc25ed8b
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_plot_heatmap
owner: bgruening
revisions:
- e57bfadcab30
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_bam_compare
owner: bgruening
revisions:
- d5d57b40b29a
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_bam_pe_fragmentsize
owner: bgruening
revisions:
- b4886e1369c4
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_multi_bam_summary
owner: bgruening
revisions:
- 87d2c75884d9
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_plot_coverage
owner: bgruening
revisions:
- 70bf1a5592be
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_bam_coverage
owner: bgruening
revisions:
- 65e0795278b4
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_compute_matrix
owner: bgruening
revisions:
- 17d456f4051b
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deeptools_multi_bigwig_summary
owner: bgruening
revisions:
- 8518a8e9ac82
tool_panel_section_label: 'NGS: DeepTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bowtie2
owner: devteam
revisions:
- a9d4f71dbfb0
tool_panel_section_label: 'NGS: Mapping'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bwa
owner: devteam
revisions:
- 546ada4a9f43
tool_panel_section_label: 'NGS: Mapping'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: megablast_xml_parser
owner: devteam
revisions:
- 03ca082aeb2e
tool_panel_section_label: 'NGS: Mapping'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: megablast_wrapper
owner: devteam
revisions:
- fb2e0e1dac89
tool_panel_section_label: 'NGS: Mapping'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bwa_wrappers
owner: devteam
revisions:
- b4427dbb6ced
tool_panel_section_label: 'NGS: Mapping'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bowtie_wrappers
owner: devteam
revisions:
- 42c4463baaad
tool_panel_section_label: 'NGS: Mapping'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: lastz
owner: devteam
revisions:
- 60afcc2c1d05
tool_panel_section_label: 'NGS: Mapping'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: tophat2
owner: devteam
revisions:
- 758594ed0364
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: hisat2
owner: iuc
revisions:
- 1eb21dccc2fa
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: diffbind
owner: bgruening
revisions:
- d6dcb3dd5f8f
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: htseq_count
owner: lparsons
revisions:
- a6dcb86af112
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cuffnorm
owner: devteam
revisions:
- 7d4c2097aac5
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: sailfish
owner: bgruening
revisions:
- 20eab032389f
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: stringtie
owner: iuc
revisions:
- 1f23fc7df25c
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cuffdiff
owner: devteam
revisions:
- 0f32ad418df8
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cuffcompare
owner: devteam
revisions:
- b77178f66fc3
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cufflinks
owner: devteam
revisions:
- a1ea9af8d5f4
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: gffread
owner: devteam
revisions:
- 48fe74f391ab
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cuffmerge
owner: devteam
revisions:
- 8160c8ea4eb9
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cuffquant
owner: devteam
revisions:
- 986b63735a5e
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: filter_transcripts_via_tracking
owner: devteam
revisions:
- 45f89dcf0b4c
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: tophat_fusion_post
owner: devteam
revisions:
- f83394a2c2da
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtool_filter2
owner: devteam
revisions:
- c31a37f6d48a
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: sam_merge
owner: devteam
revisions:
- 1977f1637890
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: sam_to_bam
owner: devteam
revisions:
- 881e16ad05c6
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: pileup_interval
owner: devteam
revisions:
- ef11139d4545
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_mpileup
owner: devteam
revisions:
- bfc4517aa037
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bcftools_view
owner: gregory-minevich
revisions:
- 6572c40a8505
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_reheader
owner: devteam
revisions:
- 020e144b5f78
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_split
owner: devteam
revisions:
- 57f3e32f809d
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_stats
owner: devteam
revisions:
- 8cfc17e27132
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bam_to_sam
owner: devteam
revisions:
- af7c50162f0b
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_sort
owner: devteam
revisions:
- a430da4f04cd
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_calmd
owner: devteam
revisions:
- 1ebb4ecdc1ef
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_bedcov
owner: devteam
revisions:
- 8c3472790020
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_idxstats
owner: devteam
revisions:
- 87398ae795c7
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_flagstat
owner: devteam
revisions:
- 0072bf593791
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_slice_bam
owner: devteam
revisions:
- 2b474ebbfc7d
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: samtools_rmdup
owner: devteam
revisions:
- bb40e4252392
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: pileup_parser
owner: devteam
revisions:
- 1670f0565000
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: sam2interval
owner: devteam
revisions:
- 8c737b8ddc45
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: sam_bitwise_flag_filter
owner: devteam
revisions:
- 0b2424a404d9
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: sam_pileup
owner: devteam
revisions:
- 890d97772e2a
tool_panel_section_label: 'NGS: SAMtools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bamtools_split
owner: devteam
revisions:
- 4555f451dd79
tool_panel_section_label: 'NGS: BamTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bamtools_filter
owner: devteam
revisions:
- 2098a49ddf66
tool_panel_section_label: 'NGS: BamTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bamtools
owner: devteam
revisions:
- ea3fc1adee75
tool_panel_section_label: 'NGS: BamTools'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: picard
owner: devteam
revisions:
- efc56ee1ade4
tool_panel_section_label: 'NGS: Picard'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: picard
owner: devteam
revisions:
- efc56ee1ade4
tool_panel_section_label: 'NGS: Picard'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfcombine
owner: devteam
revisions:
- 55ca04702702
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfgeno2haplo
owner: devteam
revisions:
- 2bdb74ab3270
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcffilter
owner: devteam
revisions:
- 34c3b846e0b6
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcf2tsv
owner: devteam
revisions:
- d6c944f1581a
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfallelicprimitives
owner: devteam
revisions:
- 3f4fefbc52c8
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfbreakcreatemulti
owner: devteam
revisions:
- f0dae4ac267e
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfrandomsample
owner: devteam
revisions:
- d9efe7842413
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfflatten
owner: devteam
revisions:
- 38d93ca9c0f0
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfselectsamples
owner: devteam
revisions:
- 88fd8ef7e4af
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfcheck
owner: devteam
revisions:
- d7d4d88ae84d
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfgenotypes
owner: devteam
revisions:
- 1673e7848bf4
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfvcfintersect
owner: devteam
revisions:
- d3f4f86a18d4
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfhethom
owner: devteam
revisions:
- 586d614a4c2d
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfleftalign
owner: devteam
revisions:
- 3e3d0dffeb1f
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfaddinfo
owner: devteam
revisions:
- 4d4b16af67aa
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfsort
owner: devteam
revisions:
- 433d50620231
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfprimers
owner: devteam
revisions:
- d485f9f1aa83
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfannotategenotypes
owner: devteam
revisions:
- c6be83b8883d
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcffixup
owner: devteam
revisions:
- a03f346b6aae
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfbedintersect
owner: devteam
revisions:
- 8a482a9aa45d
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfdistance
owner: devteam
revisions:
- 6e0fc18309f4
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfcommonsamples
owner: devteam
revisions:
- f27d6187d808
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcfannotate
owner: devteam
revisions:
- 87d916fbb7c4
tool_panel_section_label: 'NGS: VCF Manipulation'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: macs2
owner: iuc
revisions:
- 6d4babad010f
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: macs2
owner: iuc
revisions:
- 6d4babad010f
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: resize_coordinate_window
owner: iuc
revisions:
- 0164d2edba9f
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: repmatch_gff3
owner: iuc
revisions:
- a072f0f30ea3
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cwpair2
owner: iuc
revisions:
- d4db13c9dd7f
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: genetrack
owner: iuc
revisions:
- 25cd59a002d9
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: ngsutils_bam_filter
owner: iuc
revisions:
- 8187a729d9f4
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: macs
owner: devteam
revisions:
- ae2ec275332a
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: sicer
owner: devteam
revisions:
- 4a14714649b4
tool_panel_section_label: 'NGS: Peak Calling'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: table_annovar
owner: devteam
revisions:
- 08b003ee9db7
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: snpeff
owner: iuc
revisions:
- e09ce114d240
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: mutate_snp_codon
owner: devteam
revisions:
- 8f0af7251167
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: allele_counts
owner: nick
revisions:
- 411adeff1eec
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: freebayes
owner: devteam
revisions:
- 99684adf84de
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: naive_variant_caller
owner: blankenberg
revisions:
- ac0235d2d459
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: varscan_version_2
owner: devteam
revisions:
- 44d514f3df8f
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcftools_annotate
owner: devteam
revisions:
- 57a6550df582
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcftools_slice
owner: devteam
revisions:
- 1363e5d4a8b8
tool_panel_section_label: 'NGS: Variant Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: merge
owner: devteam
revisions:
- 1bc76ceffa7f
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: concat
owner: devteam
revisions:
- d491589307e7
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: subtract
owner: devteam
revisions:
- c19a2a29c561
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: join
owner: devteam
revisions:
- de21bdbb8d28
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: intersect
owner: devteam
revisions:
- 77641d5731c8
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: coverage
owner: devteam
revisions:
- bc9c66c1e9c9
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: complement
owner: devteam
revisions:
- 2221cf5f59aa
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cluster
owner: devteam
revisions:
- 520de69b107a
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: basecoverage
owner: devteam
revisions:
- 0a3e3133b09d
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: annotation_profiler
owner: devteam
revisions:
- 3b33da018e74
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: flanking_features
owner: devteam
revisions:
- 90100b587723
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: get_flanks
owner: devteam
revisions:
- 4b14d0e3a837
tool_panel_section_label: Operate on Genomic Intervals
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: t_test_two_samples
owner: devteam
revisions:
- c2ffc9885b5a
tool_panel_section_id: stats # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: count_gff_features
owner: devteam
revisions:
- fabda887a71f
tool_panel_section_id: stats # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: mine
owner: devteam
revisions:
- 5e2c89443c44
tool_panel_section_id: stats # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: plot_from_lda
owner: devteam
revisions:
- c5ab37076128
tool_panel_section_id: stats # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: lda_analysis
owner: devteam
revisions:
- f38763b52f33
tool_panel_section_id: stats # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: generate_pc_lda_matrix
owner: devteam
revisions:
- 04cdbd00dcec
tool_panel_section_id: stats # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: correlation
owner: devteam
revisions:
- 24e01abf9e34
tool_panel_section_id: stats # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: venn_list
owner: peterjc
revisions:
- 26e35d5133a1
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: ucsc_custom_track
owner: devteam
revisions:
- 618e56c3109b
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: scatterplot
owner: devteam
revisions:
- c12b0759203b
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: histogram
owner: devteam
revisions:
- 6ff47de059a0
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: xy_plot
owner: devteam
revisions:
- 23657fcaaa5c
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: gmaj
owner: devteam
revisions:
- 2cd5ee197ec7
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cloudmap_variant_discovery_mapping
owner: gregory-minevich
revisions:
- 552fd088910e
tool_panel_section_label: CloudMap
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cloudmap_in_silico_complementation
owner: gregory-minevich
revisions:
- 5389dc5a0be3
tool_panel_section_label: CloudMap
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: ems_variant_density_mapping
owner: gregory-minevich
revisions:
- 5cc9b35b5a52
tool_panel_section_label: CloudMap
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: snp_mapping_using_wgs
owner: gregory-minevich
revisions:
- 6b5bd5faf836
tool_panel_section_label: CloudMap
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: check_snpeff_candidates
owner: gregory-minevich
revisions:
- f20585ccbf05
tool_panel_section_label: CloudMap
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: dgidb_annotator
owner: devteam
revisions:
- c5bb987015c5
- 792f3cb0eff4
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vcf2pgsnp
owner: devteam
revisions:
- 5fca46616675
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: snpfreq
owner: devteam
revisions:
- 72ea0d13dd66
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: ctd_batch
owner: devteam
revisions:
- 4a32700dcaa2
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: divide_pg_snp
owner: devteam
revisions:
- f74fdfc17143
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: hgv_fundo
owner: devteam
revisions:
- 64133669255f
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: hgv_hilbertvis
owner: devteam
revisions:
- 0e80ffa5b7f7
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: freebayes_wrapper
owner: devteam
revisions:
- 33a0e6aca936
tool_panel_section_label: Phenotype Association
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bedtools
owner: iuc
revisions:
- d25966c8ddeb
- 2cd7e321d259
tool_panel_section_label: BEDTools
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bedtools
owner: iuc
revisions:
- d25966c8ddeb
tool_panel_section_label: BEDTools
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bedtools
owner: iuc
revisions:
- 2cd7e321d259
tool_panel_section_label: BEDTools
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: quality_filter
owner: devteam
revisions:
- 6c6f15373f96
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: substitution_rates
owner: devteam
revisions:
- d1b35bcdaacc
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: substitutions
owner: devteam
revisions:
- c54f5d0bbb58
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: weightedaverage
owner: devteam
revisions:
- 90611e86a998
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: indels_3way
owner: devteam
revisions:
- 5ad24b81dd10
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: featurecounter
owner: devteam
revisions:
- ac6218e2b686
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: getindelrates_3way
owner: devteam
revisions:
- d427e5acb9ee
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: maf_cpg_filter
owner: devteam
revisions:
- 7f2a12cb047d
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: microsats_mutability
owner: devteam
revisions:
- 4aa1ee5d8510
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: getindels_2way
owner: devteam
revisions:
- f1dc6f5fce6e
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: microsats_alignment_level
owner: devteam
revisions:
- 7852385470f3
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: windowsplitter
owner: devteam
revisions:
- 592089499ae7
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: karyotype_plot
owner: guru-ananda
revisions:
- d810aa84ee6a
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: rhmm
owner: guru-ananda
revisions:
- 38f5cd46ffd3
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: heatmap
owner: guru-ananda
revisions:
- dbd447fcd3e4
tool_panel_section_label: Regional Variation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fasta_filter_by_length
owner: devteam
revisions:
- 16679a7f554a
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fasta_concatenate_by_species
owner: devteam
revisions:
- 717aee069681
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fasta_compute_length
owner: devteam
revisions:
- ece409f6573c
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fasta_formatter
owner: devteam
revisions:
- 1dbb5181c327
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: fasta_nucleotide_changer
owner: devteam
revisions:
- 2f868bfbe9de
tool_panel_section_label: FASTA manipulation
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: mafft
owner: rnateam
revisions:
- f0606dfd5195
tool_panel_section_label: Multiple Alignments
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: clustalw
owner: devteam
revisions:
- 7cc64024fe92
tool_panel_section_label: Multiple Alignments
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: kraken_report
owner: devteam
revisions:
- 9ae975c30dde
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: kraken_translate
owner: devteam
revisions:
- b9971bca4b01
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: kraken_filter
owner: devteam
revisions:
- fe94f318048c
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: kraken
owner: devteam
revisions:
- b2392a9dfb01
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vegan_diversity
owner: iuc
revisions:
- 2c771b437502
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vegan_fisher_alpha
owner: iuc
revisions:
- d6b92ca3a9a1
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vegan_rarefaction
owner: iuc
revisions:
- dd2705a31239
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: taxonomy_krona_chart
owner: crs4
revisions:
- f11a04ed443b
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vsearch
owner: iuc
revisions:
- 4258854759ba
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: vsearch
owner: iuc
revisions:
- 4258854759ba
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: diamond
owner: bgruening
revisions:
- 98037ef3d2a9
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: kraken2tax
owner: devteam
revisions:
- d844fdcce44e
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cd_hit_dup
owner: devteam
revisions:
- 0fb894bd8eba
tool_panel_section_label: Metagenomic Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: linear_regression
owner: devteam
revisions:
- cf431604ec3e
tool_panel_section_label: Multiple regression
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: logistic_regression_vif
owner: devteam
revisions:
- bd196d7c1ca9
tool_panel_section_label: Multiple regression
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: partialr_square
owner: devteam
revisions:
- 88ef41de020d
tool_panel_section_label: Multiple regression
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: rcve
owner: devteam
revisions:
- 7740956d197b
tool_panel_section_label: Multiple regression
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: best_regression_subsets
owner: devteam
revisions:
- 4f33ec73e445
tool_panel_section_label: Multiple regression
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: canonical_correlation_analysis
owner: devteam
revisions:
- 9bc0c48a027f
tool_panel_section_label: Multivariate Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: kernel_canonical_correlation_analysis
owner: devteam
revisions:
- 7a092113eb8c
tool_panel_section_label: Multivariate Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: kernel_principal_component_analysis
owner: devteam
revisions:
- e9ebd4bfbdfc
tool_panel_section_label: Multivariate Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: principal_component_analysis
owner: devteam
revisions:
- f568051cdf2e
tool_panel_section_label: Multivariate Analysis
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: meme_fimo
owner: iuc
revisions:
- eca84de658b0
tool_panel_section_label: Motif Tools
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: meme_meme
owner: iuc
revisions:
- 62d1fae3b7d3
tool_panel_section_label: Motif Tools
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: str_fm
owner: arkarachai-fungtammasan
revisions:
- 48b5f719e36a
tool_panel_section_label: 'STR-FM: Microsatellite Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: str_fm
owner: arkarachai-fungtammasan
revisions:
- 48b5f719e36a
tool_panel_section_label: 'STR-FM: Microsatellite Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: table_recalibration
owner: devteam
revisions:
- 30e1dd77e99c
tool_panel_section_label: 'NGS: GATK Tools (beta)'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: spades
owner: nml
tool_panel_section_label: 'NGS: Assembly'
install_resolver_dependencies: False
- name: metaspades
owner: nml
tool_panel_section_label: 'NGS: Assembly'
install_resolver_dependencies: False
- name: rnaspades
owner: iuc
tool_panel_section_label: 'NGS: Assembly'
install_resolver_dependencies: False
- name: column_maker
owner: devteam
revisions:
- 626658afe4cb
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: regex_replace
owner: kellrott
revisions:
- 9a77d5fca67c
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: deseq2
owner: iuc
revisions:
- 6f91b8ce6e07
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: cast
owner: moheydarian
revisions:
- d7e3814be68e
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://testtoolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: melt
owner: moheydarian
revisions:
- 3621af0e3ef7
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://testtoolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: unique
owner: bgruening
revisions:
- 7ce75adb93be
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: featurecounts
owner: iuc
revisions:
- de2c5e5a206c
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: ggplot_scatterplot
owner: moheydarian
revisions:
- fed4e754376e
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://testtoolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: ggplot_histogram
owner: moheydarian
revisions:
- 0d872b4dfca1
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://testtoolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: ggplot_violin_plot
owner: moheydarian
revisions:
- 996c274d942d
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://testtoolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: collection_column_join
owner: iuc
revisions:
- 9c8536c7ed42
tool_panel_section_label: 'Collection Operations'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: bundle_collections
owner: nml
revisions:
- bae199dc511f
tool_panel_section_label: 'Collection Operations'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: collapse_collections
owner: nml
revisions:
- 25136a2b0cfe
tool_panel_section_label: 'Collection Operations'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: datamash_ops
owner: iuc
revisions:
- 2f3c6f2dcf39
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: datamash_reverse
owner: iuc
revisions:
- 3234b2813413
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: datamash_transpose
owner: iuc
revisions:
- 1cb70a56fc89
tool_panel_section_id: textutil # Use ID since the group is included w/ Galaxy
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: tsne
owner: moheydarian
revisions:
- c99a60c49682
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://testtoolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: heatmap2
owner: moheydarian
revisions:
- c1f0f262836a
tool_panel_section_id: plots # Use ID since the group is included w/ Galaxy
tool_shed_url: https://testtoolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
- name: gffcompare
owner: iuc
revisions:
- 3c97c841a443
tool_panel_section_label: 'NGS: RNA Analysis'
tool_shed_url: https://toolshed.g2.bx.psu.edu/
install_resolver_dependencies: False
##########
# The Following list of tools in the commented section DO NOT install cleanly.
##########
# - name: diffbind
# owner: bgruening
# revisions:
# - 492d5ac7b2e2
# tool_panel_section_label: 'NGS: Peak Calling'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: weblogo3
# owner: devteam
# revisions:
# - c1a9e644d580
# tool_panel_section_label: Motif Tools
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: sra_tools
# owner: iuc
# revisions:
# - 462ee06c9358
# tool_panel_section_label: NCBI SRA Tools
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: cummerbund
# owner: devteam
# revisions:
# - ba8fde59843d
# tool_panel_section_label: 'NGS: RNA Analysis'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: cummerbund_to_tabular
# owner: devteam
# revisions:
# - 0761bbc0a4e7
# tool_panel_section_label: 'NGS: RNA Analysis'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# # - name: variant_select
# owner: devteam
# revisions:
# - 227aa321a671
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: print_reads
# owner: devteam
# revisions:
# - a8b94864fe35
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: variants_validate
# owner: devteam
# revisions:
# - 7e1ecaa64370
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: variant_recalibrator
# owner: devteam
# revisions:
# - cb7cf57397a7
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: variant_filtration
# owner: devteam
# revisions:
# - da6e2503c62d
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: variant_eval
# owner: devteam
# revisions:
# - fbca1c0956d2
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: variant_combine
# owner: devteam
# revisions:
# - 1a6e16391727
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: variant_apply_recalibration
# owner: devteam
# revisions:
# - 350a4d0d1678
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: variant_annotator
# owner: devteam
# revisions:
# - ae9d0a543e9b
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: unified_genotyper
# owner: devteam
# revisions:
# - 66dd4d4c1743
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: realigner_target_creator
# owner: devteam
# revisions:
# - 5b8eaae854da
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: indel_realigner
# owner: devteam
# revisions:
# - bb0beda6cf83
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: depth_of_coverage
# owner: devteam
# revisions:
# - c3f08370fc82
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: count_covariates
# owner: devteam
# revisions:
# - 14e304b70425
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: analyze_covariates
# owner: devteam
# revisions:
# - 738bc749f9a3
# tool_panel_section_label: 'NGS: GATK Tools (beta)'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
#- name: genome_diversity
#owner: miller-lab
#revisions:
#- 9d0b1fa77047
#tool_panel_section_label: Genome Diversity
#tool_shed_url: https://toolshed.g2.bx.psu.edu/
#install_resolver_dependencies: False
#- name: genome_diversity
#owner: miller-lab
#revisions:
#- 9d0b1fa77047
#tool_panel_section_label: Genome Diversity
#tool_shed_url: https://toolshed.g2.bx.psu.edu/
#install_resolver_dependencies: False
#- name: genome_diversity
#owner: miller-lab
#revisions:
#- 9d0b1fa77047
#tool_panel_section_label: Genome Diversity
#tool_shed_url: https://toolshed.g2.bx.psu.edu/
#install_resolver_dependencies: False
#- name: genome_diversity
#owner: miller-lab
#revisions:
#- 9d0b1fa77047
#tool_panel_section_label: Genome Diversity
#tool_shed_url: https://toolshed.g2.bx.psu.edu/
#install_resolver_dependencies: False
# - name: emboss_5
# owner: devteam
# revisions:
# - 511429456d3c
# tool_panel_section_label: EMBOSS
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: emboss_5
# owner: devteam
# revisions:
# - 511429456d3c
# tool_panel_section_label: EMBOSS
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: emboss_5
# owner: devteam
# revisions:
# - 511429456d3c
# tool_panel_section_label: EMBOSS
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: emboss_5
# owner: devteam
# revisions:
# - 511429456d3c
# tool_panel_section_label: EMBOSS
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: structurefold
# owner: tyty
# revisions:
# - 7bb98e9296e9
# tool_panel_section_label: 'NGS: RNA Structure'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: sequence_content_trimmer
# owner: nick
# revisions:
# - 7f170cb06e2e
# tool_panel_section_label: 'NGS: Du Novo'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: duplex
# owner: nick
# revisions:
# - 7f513b9b1b1e
# tool_panel_section_label: 'NGS: Du Novo'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_pathways
# owner: iuc
# revisions:
# - 2bce41988d8e
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_roh
# owner: iuc
# revisions:
# - e7ad2a721c4b
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_query
# owner: iuc
# revisions:
# - 5596c2dc4218
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_fusions
# owner: iuc
# revisions:
# - 37f9901b674d
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_dump
# owner: iuc
# revisions:
# - c3da7c5f2141
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_gene_wise
# owner: iuc
# revisions:
# - 0db31ae5295e
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_annotate
# owner: iuc
# revisions:
# - 3859552a63d8
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_comp_hets
# owner: iuc
# revisions:
# - 6192f3a2f96f
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_mendel_errors
# owner: iuc
# revisions:
# - 009a8d614a83
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_region
# owner: iuc
# revisions:
# - 0239bb5482c1
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_recessive_and_dominant
# owner: iuc
# revisions:
# - a78bfd5264b1
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_load
# owner: iuc
# revisions:
# - 9f74d7b0704a
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_qc
# owner: iuc
# revisions:
# - 5d18dcbf2a0c
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_interactions
# owner: iuc
# revisions:
# - 2ddee6cd4a5a
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_amend
# owner: iuc
# revisions:
# - 2281967e7bc3
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_lof_sieve
# owner: iuc
# revisions:
# - e1920f41a1ca
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_burden
# owner: iuc
# revisions:
# - 95a149a9a75d
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_db_info
# owner: iuc
# revisions:
# - b597e1cd14b1
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_windower
# owner: iuc
# revisions:
# - 9b462be5a604
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_actionable_mutations
# owner: iuc
# revisions:
# - 9f0f5e984ae3
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_stats
# owner: iuc
# revisions:
# - a0ee6874a23b
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_set_somatic
# owner: iuc
# revisions:
# - 5fd4a5f9ee31
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: gemini_de_novo
# owner: iuc
# revisions:
# - 8850488002dc
# tool_panel_section_label: 'NGS: Gemini'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: phylorelatives
# owner: boris
# revisions:
# - 06d6e56e8c2b
# tool_panel_section_label: 'NGS: Variant Analysis'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
#- name: hetbox
#owner: boris
#revisions:
#- 8d2c4c11fd8f
#tool_panel_section_label: 'NGS: Variant Analysis'
#tool_shed_url: https://toolshed.g2.bx.psu.edu/
#install_resolver_dependencies: False
# - name: getalleleseq
# owner: boris
# revisions:
# - 5a89151b5e82
# tool_panel_section_label: 'NGS: Variant Analysis'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: deeptools_plot_profile
# owner: bgruening
# revisions:
# - f454a9fe7af9
# tool_panel_section_label: 'NGS: DeepTools'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
# - name: filter_on_md
# owner: boris
# revisions:
# - ac70bfaf1224
# tool_panel_section_label: 'NGS: SAMtools'
# tool_shed_url: https://toolshed.g2.bx.psu.edu/
# install_resolver_dependencies: False
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