index.md

title	url	scope	platforms	summary	image	comments	user_support	quotas	citations	pub_libraries	sponsors
GalaxyTrakr	https://galaxytrakr.org/	domain	platform_group platform_url platform_text platform_location public-server https://galaxytrakr.org/ GalaxyTrakr Server US	Supporting food-borne pathogen research	galaxytrakr-logo.jpg	Open-source bioinformatics for public health GalaxyTrakr hosts a number of bacterial typing and analysis tools such as [Mitokmer](https://toolshed.g2.bx.psu.edu/repository?repository_id=dd4d206abdad7e4b&changeset_revision=3c3520289da4) and some that aren’t hosted in the main Galaxy toolshed, such as [CFSAN SNP Pipeline](https://toolrepo.galaxytrakr.org/repository?repository_id=f3f73e481f432006&changeset_revision=568eb62c7524).	[User Guide](https://s3.amazonaws.com/cfsan-genometrakr-docs/user+guide/Galaxy+Genome+Trakr+User+Guide.pdf), [FAQ](https://cfsan-genometrakr-docs.s3.amazonaws.com/user+guide/FAQs+for+GalaxyTrakr.pdf), and [Videos](https://youtube.com/playlist?list=PLey4Qe-Uxcxb3-J7Pn4Y8IpMbRPxFzuqo). [Email](mailto:GalaxyTrakrSupport_at_fda.hhs.gov) support	Available to any public health lab in any country working on foodborne pathogens. We also support researchers and educational programs/classes focused on foodborne pathogens. We also will consider supporting other public health needs as makes sense. A login is required. Anyone in public health can [apply for a login](https://account.galaxytrakr.org/Account/Register). 250 GB of storage is allocated for each user.	Gangiredla, J., Rand, H., Benisatto, D., Payne, J., Strittmatter, C., Sanders, J., Wolfgang, W. J., Libuit, K., Herrick, J. B., Prarat, M., Toro, M., Farrell, T., & Strain, E. (2021). [GalaxyTrakr: A distributed analysis tool for public health whole genome sequence data accessible to non-bioinformaticians](https://doi.org/10.1186/s12864-021-07405-8). *BMC Genomics*, 22(1), 114. DOI: 10.1186/s12864-021-07405-8 Timme, R., Laxmi, S., Balkey, M., Randolf, R., Wolfgang, W., & Strain, E. (2020). [Assessing sequence quality in GalaxyTrakr v1](https://doi.org/10.17504/protocols.io.babuianw). In *Protocols.io*. doi: 10.17504/protocols.io.babuianw	GalaxyTrakr	[US Food and Drug Administration](https://www.fda.gov/)