index.md

title	url	scope	platforms	summary	image	comments	user_support	quotas	citations	pub_libraries	sponsors
Metagenomics	https://metagenomics.usegalaxy.eu/	domain	platform_group platform_url platform_text platform_location public-server https://metagenomics.usegalaxy.eu/ Server DE	a webserver to process, analyse and visualize Metagenomic and Microbiota data in general.	/use/asaim/asaim-figure1.png	More than 200 tools are integrated in this custom Galaxy instance. They were chosen for their use in exploitation of microbiota data. The public server is hosted by the UseGalaxy.eu team.	[Training materials](https://galaxyproject.github.io/training-material/topics/metagenomics/) [UseGalaxy.eu Gitter Support Channel](https://gitter.im/galaxycomputationalchemistry/Lobby) [Galaxy Help Forum](https://help.galaxyproject.org/)	Storage and computational quotas.	Mehta, S., Crane, M., Leith, E., Batut, B., Hiltemann, S., Arntzen, M. Ø., Kunath, B. J., Delogu, F., Sajulga, R., Kumar, P., Johnson, J. E., Griffin, T. J., & Jagtap, P. D. (2021). [ASaiM-MT: A validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework](https://doi.org/10.12688/f1000research.28608.1). *F1000Research*, 10, 103. doi: 10.12688/f1000research.28608.1 Batut, B., Gravouil, K., Defois, C., Hiltemann, S., Brugère, J.-F., Peyretaillade, E., & Peyret, P. (2018). [ASaiM: A Galaxy-based framework to analyze microbiota data](https://doi.org/10.1093/gigascience/giy057). *GigaScience*, 7(6). doi: 10.1093/gigascience/giy057	Metagenomics EU	The [Freiburg Galaxy Team](https://usegalaxy-eu.github.io/freiburg/) but also collectively by groups and individuals from across Europe