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title url scope platforms summary image comments user_support quotas citations pub_libraries sponsors
Oqtans
domain
platform_group platform_url platform_text platform_location
public-server
Oqtans Galaxy Server
CH
platform_group platform_url platform_text
commercial-cloud
Oqtans on AWS
Customized Galaxy, extended with machine learning based tools for sequence and tiling array data analysis.
/src/use/oqtans/oqtans.png
The Oqtans tool suite is available as:
as a [public Galaxy instance](http://galaxy.inf.ethz.ch)
as a [git repository](http://oqtans.org/git)
most of these tools are moreover available from the Galaxy Toolshed
a preconfigured Amazon Machine Image (AMI, `ami-65376a0c`) and share string (`cm-ba5c56b95144e564f70e5762dc5fa177/shared/2013-11-07--22-16/`) to launch Galaxy CloudMan using sharing instance functionality.
Oqtans capabilities are shown with [Galaxy Pages](http://oqtans.org/usecases) for which all data, parameters, intermediate output, and final results are made public.<br />
For problems with any of the non-standard tools, please contact the [MLB Galaxy Support Team](mailto:galaxy AT raetschlab DOT org).
[Oqtans: The RNA-seq Workbench in the Cloud for Complete and Reproducible Quantitative Transcriptome Analysis](http://bioinformatics.oxfordjournals.org/content/early/2014/01/10/bioinformatics.btt731.abstract?keytype=ref&ijkey=u23qkvDAUTdBog1), by Sreedharan, *et al.,* *Bioinformatics* (2014), doi: 10.1093/bioinformatics/btt731
[Oqtans: a multifunctional workbench for RNA-seq data analysis](https://doi.org/10.1186/1471-2105-15-S3-A7), Vipin T Sreedharan, Sebastian J Schultheiss, Géraldine Jean, André Kahles, Regina Bohnert, Philipp Drewe, Pramod Mudrakarta, Nico Görnitz, Georg Zeller and Gunnar Rätsch. *BMC Bioinformatics* 2014 15(Suppl 3):A7
[Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data](https://doi.org/10.1186/1471-2105-12-S11-A7), Sebastian J Schultheiss, Géraldine Jean, Jonas Behr, Regina Bohnert, Philipp Drewe, Nico Görnitz, André Kahles, Pramod Mudrakarta, Vipin T Sreedharan, Georg Zeller and Gunnar Rätsch. *BMC Bioinformatics* 2011 12(Suppl 11):A7, doi:10.1186/1471-2105-12-S11-A7
Oqtans
[Machine Learning in Biology (MLB) Group](http://cbio.mskcc.org/research/ratsch-research-group/) at [cBio@MSKCC](http://cbio.mskcc.org/) in New York City, United States.
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