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Latest commit a5ea106 Feb 24, 2017 @bgruening bgruening committed on GitHub Merge pull request #3662 from natefoo/ie-error-message
Display an error message when IE loading raises an exception
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.ci Ignore Node modules installed for the IE proxy when linting Feb 24, 2017
client Merge branch 'dev' of https://github.com/galaxyproject/galaxy into dev Feb 22, 2017
config Bump Jupyter container version to 16.01.1 Feb 24, 2017
contrib Update Nagios check Feb 7, 2017
cron Fixes for pycodestyle 2.2.0 Nov 15, 2016
database Restore database/info.txt. Sep 1, 2016
display_applications Edit of Authors Dec 16, 2016
doc Merge branch 'release_17.01' into dev Feb 16, 2017
external_service_types Fixes for transferring files from external services using the http pr… Apr 14, 2011
lib Merge pull request #3662 from natefoo/ie-error-message Feb 24, 2017
locale Modify some string in Mako templetes for complete i18n support. Nov 24, 2011
openid Allow GenomeSpace OpenID provider for log in. Apr 13, 2012
scripts Reduce indentation from 6 to 4 whitespaces Feb 22, 2017
static Rebuild client -- bad merge previously. Feb 22, 2017
templates Merge branch 'release_17.01' into dev Feb 14, 2017
test-data added functional test for <is_valid_xml> Feb 2, 2017
test Merge branch 'release_17.01' into dev Feb 22, 2017
tool-data BLAST database *.loc.sample files Nov 4, 2016
tools Lint some tools Jan 23, 2017
.coveragerc Create unit test directory with example test. Enable coverage report … Jun 24, 2013
.gitignore Properly integrate tool XML schema with docs Oct 24, 2016
.travis.yml Merge branch 'release_16.07' into dev Oct 11, 2016
CITATION Adding a CITATION file, http://software-carpentry.org/blog/2013/09/in… Sep 2, 2013
CODE_OF_CONDUCT.md Fix typo found by @nsoranzo. Aug 25, 2015
CONTRIBUTING.md Align architecture slides with training-material remarkjs template. Feb 10, 2017
CONTRIBUTORS.md Give my work email address as well. Nov 4, 2016
LICENSE.txt Update the Copyright year in the LICENSE.txt. Sep 15, 2016
Makefile Override possible env var use which can break this -- we always want … Dec 12, 2016
README.rst change badge docs color Jan 23, 2017
create_db.sh Fix create/manage db scripts to respect GALAXY_VIRTUAL_ENV. Feb 29, 2016
extract_dataset_parts.sh Fix for splitting with outputs_to_working_directory = True, also rena… Nov 3, 2011
manage_db.sh Fix create/manage db scripts to respect GALAXY_VIRTUAL_ENV. Feb 29, 2016
manage_tools.sh Update more scripts to respect GALAXY_VIRTUAL_ENV. Mar 3, 2016
requirements.txt Pin release wheel verisons. pinned-requirements.txt renamed to Jan 13, 2016
rolling_restart.sh Restore a line deleted by mistake. Thanks John. Feb 2, 2015
run.sh Merge remote-tracking branch 'jmchilton/dev' into feature/webhooks_tests Jan 29, 2017
run_reports.sh Another fix for virtualenv fixes. Mar 10, 2016
run_tests.sh Update the testing image used with ``--dockerize``ed tests. Jan 10, 2017
run_tool_shed.sh Fix path Nov 1, 2016
setup.cfg Initial docstring linting. Oct 4, 2016
tool_list.py Make some files compatible with Python3 Jun 3, 2016
tox.ini Un-pin flake8 and plugins in tox.ini Jan 24, 2017

README.rst

Galaxy Logo

The latest information about Galaxy is available via https://galaxyproject.org/

Ask a question Chat on irc Chat on gitter Release Documentation Inspect the test results

Galaxy Quickstart

Galaxy requires Python 2.7 To check your python version, run:

$ python -V
Python 2.7.3

Start Galaxy:

$ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your browser at:

http://localhost:8080

You may wish to make changes from the default configuration. This can be done in the config/galaxy.ini file. Tools can be either installed from the Tool Shed or added manually. For details please see the Galaxy wiki:

https://wiki.galaxyproject.org/Admin/Tools/AddToolFromToolShedTutorial

Not all dependencies are included for the tools provided in the sample tool_conf.xml. A full list of external dependencies is available at:

https://wiki.galaxyproject.org/Admin/Tools/ToolDependencies

Issues and Galaxy Development

Please see CONTRIBUTING.md .

Roadmap

Interested in the next steps for Galaxy? Take a look here: https://github.com/galaxyproject/galaxy/issues/1928