datatypes_conf.xml.sample

<?xml version="1.0"?>
<datatypes>
  <registration converters_path="lib/galaxy/datatypes/converters" display_path="display_applications">
    <datatype extension="source.h" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" description="C or cpp header file"/>
    <datatype extension="source.c" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" description="C source file"/>
    <datatype extension="source.cpp" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" description="C++ source file" />
    <datatype extension="source.py" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" description="Python source file"/>
    <datatype extension="source.go" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" description="Go source file"/>
    <datatype extension="source.rs" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" description="Rust source file" />
    <datatype extension="source.cs" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true" description="C# source file" />
    <datatype extension="hep.root" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" description="ROOT binary file."/>
    <datatype extension="jp2" type="galaxy.datatypes.binary:JP2" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="ab1" type="galaxy.datatypes.binary:Ab1" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'ab1' format with a '.ab1' file extension.  You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Ab1"/>
    <datatype extension="afg" type="galaxy.datatypes.assembly:Amos" display_in_upload="false"/>
    <datatype extension="agp" type="galaxy.datatypes.goldenpath:GoldenPath" display_in_upload="true" description="UCSC GoldenPath assembly"/>
    <datatype extension="anvio_cog_profile" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" subclass="true" />
    <datatype extension="anvio_composite" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" />
    <datatype extension="anvio_classifier" type="galaxy.datatypes.data:Data" display_in_upload="false" subclass="true" />
    <datatype extension="anvio_contigs_db" type="galaxy.datatypes.anvio:AnvioContigsDB" display_in_upload="false" />
    <datatype extension="anvio_db" type="galaxy.datatypes.anvio:AnvioDB" display_in_upload="false" />
    <datatype extension="anvio_genomes_db" type="galaxy.datatypes.anvio:AnvioGenomesDB" display_in_upload="false" />
    <datatype extension="anvio_pan_db" type="galaxy.datatypes.anvio:AnvioPanDB" display_in_upload="false" />
    <datatype extension="anvio_pfam_profile" type="galaxy.datatypes.anvio:AnvioComposite" display_in_upload="false" subclass="true" />
    <datatype extension="anvio_profile_db" type="galaxy.datatypes.anvio:AnvioProfileDB" display_in_upload="false" />
    <datatype extension="anvio_samples_db" type="galaxy.datatypes.anvio:AnvioSamplesDB" display_in_upload="false" />
    <datatype extension="anvio_state" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false" />
    <datatype extension="anvio_structure_db" type="galaxy.datatypes.anvio:AnvioStructureDB" display_in_upload="false" />
    <datatype extension="anvio_variability" type="galaxy.datatypes.tabular:TSV" display_in_upload="false" subclass="true" />
    <datatype extension="arff" type="galaxy.datatypes.text:Arff" mimetype="text/plain" display_in_upload="true"/>
    <datatype extension="paf" auto_compressed_types="gz" type="galaxy.datatypes.text:Paf" mimetype="text/plain" display_in_upload="true"/>
    <datatype extension="gfa1" type="galaxy.datatypes.text:Gfa1" mimetype="text/plain" display_in_upload="true"/>
    <datatype extension="gfa2" type="galaxy.datatypes.text:Gfa2" mimetype="text/plain" display_in_upload="true"/>
    <datatype extension="asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" display_in_upload="true"/>
    <datatype extension="asn1-binary" type="galaxy.datatypes.binary:GenericAsn1Binary" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="axt" type="galaxy.datatypes.sequence:Axt" display_in_upload="true" description="blastz pairwise alignment format.  Each alignment block in an axt file contains three lines: a summary line and 2 sequence lines.  Blocks are separated from one another by blank lines.  The summary line contains chromosomal position and size information about the alignment. It consists of 9 required fields." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Axt"/>
    <datatype extension="fli" type="galaxy.datatypes.tabular:FeatureLocationIndex" display_in_upload="false"/>
    <datatype extension="bam" type="galaxy.datatypes.binary:Bam" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM">
      <converter file="bam_to_bai.xml" target_datatype="bai"/>
      <converter file="bam_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/>
      <display file="ucsc/bam.xml"/>
      <display file="ensembl/ensembl_bam.xml"/>
      <display file="igv/bam.xml"/>
      <display file="igb/bam.xml"/>
      <display file="iobio/bam.xml"/>
    </datatype>
    <datatype extension="bai" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="false"/>
    <datatype extension="qname_input_sorted.bam" type="galaxy.datatypes.binary:BamInputSorted" mimetype="application/octet-stream" display_in_upload="false" description="A binary file compressed in the BGZF format with a '.bam' file extension and sorted based on the aligner output." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM">
    </datatype>
    <datatype extension="qname_sorted.bam" type="galaxy.datatypes.binary:BamQuerynameSorted" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension and sorted by queryname." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM">
    </datatype>
    <datatype extension="unsorted.bam" type="galaxy.datatypes.binary:BamNative" mimetype="application/octet-stream" display_in_upload="true" description="A binary file compressed in the BGZF format with a '.bam' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#BAM">
      <converter file="bam_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <converter file="to_coordinate_sorted_bam.xml" target_datatype="bam"/>
      <converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/>
    </datatype>
    <datatype extension="probam" type="galaxy.datatypes.binary:ProBam" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="cram" type="galaxy.datatypes.binary:CRAM" mimetype="application/octet-stream" display_in_upload="true" description="CRAM is a file format for highly efficient and tunable reference-based compression of alignment data." description_url="http://www.ebi.ac.uk/ena/software/cram-usage">
      <converter file="cram_to_bam_converter.xml" target_datatype="bam"/>
    </datatype>
    <datatype extension="bed" type="galaxy.datatypes.interval:Bed" display_in_upload="true" description="BED format provides a flexible way to define the data lines that are displayed in an annotation track. BED lines have three required columns and nine additional optional columns. The three required columns are chrom, chromStart and chromEnd." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Bed">
      <converter file="bed_to_gff_converter.xml" target_datatype="gff"/>
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
      <converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
      <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <converter file="bed_to_fli_converter.xml" target_datatype="fli"/>
      <!-- <display file="ucsc/interval_as_bed.xml" /> -->
      <display file="igb/bed.xml"/>
    </datatype>
    <datatype extension="bedgraph" type="galaxy.datatypes.interval:BedGraph" display_in_upload="true">
      <converter file="bedgraph_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <display file="igb/bedgraph.xml"/>
    </datatype>
    <datatype extension="bedstrict" type="galaxy.datatypes.interval:BedStrict" display_in_upload="true"/>
    <datatype extension="bed6" type="galaxy.datatypes.interval:Bed6" display_in_upload="true">
    </datatype>
    <datatype extension="bed12" type="galaxy.datatypes.interval:Bed12" display_in_upload="true"/>
    <datatype extension="probed" type="galaxy.datatypes.interval:ProBed" display_in_upload="true"/>
    <datatype extension="len" type="galaxy.datatypes.chrominfo:ChromInfo" display_in_upload="true">
      <converter file="len_to_linecount.xml" target_datatype="linecount"/>
    </datatype>
    <datatype extension="daa" type="galaxy.datatypes.binary:DAA" display_in_upload="true"/>
    <datatype extension="rma6" type="galaxy.datatypes.binary:RMA6" display_in_upload="true"/>
    <datatype extension="dmnd" type="galaxy.datatypes.binary:DMND" display_in_upload="false"/>
    <datatype extension="parquet" type="galaxy.datatypes.binary:Parquet" display_in_upload="true"/>
    <datatype extension="idat" type="galaxy.datatypes.binary:Idat" display_in_upload="true"/>
    <datatype extension="bigbed" type="galaxy.datatypes.binary:BigBed" mimetype="application/octet-stream" display_in_upload="true">
      <display file="ucsc/bigbed.xml"/>
      <display file="igb/bb.xml"/>
    </datatype>
    <datatype extension="bigwig" type="galaxy.datatypes.binary:BigWig" mimetype="application/octet-stream" display_in_upload="true">
      <display file="ucsc/bigwig.xml"/>
      <display file="igb/bigwig.xml"/>
      <display file="igv/bigwig.xml"/>
    </datatype>
    <datatype extension="cxb" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" subclass="true" display_in_upload="true" description="Cuffquant output format"/>
    <datatype extension="chrint" type="galaxy.datatypes.interval:ChromatinInteractions" display_in_upload="true">
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
      <converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
      <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
    </datatype>
    <datatype extension="csv" type="galaxy.datatypes.tabular:CSV" display_in_upload="true">
      <converter file="csv_to_tabular.xml" target_datatype="tabular"/>
    </datatype>
    <datatype extension="tsv" type="galaxy.datatypes.tabular:TSV" display_in_upload="true">
      <converter file="tabular_to_csv.xml" target_datatype="csv"/>
    </datatype>
    <datatype extension="intermine_tabular" type="galaxy.datatypes.tabular:TSV" subclass="true" display_in_upload="true">
      <display file="intermine/intermine_simple.xml"/>
    </datatype>
    <datatype extension="customtrack" type="galaxy.datatypes.interval:CustomTrack"/>
    <datatype extension="bowtie_color_index" type="galaxy.datatypes.ngsindex:BowtieColorIndex" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="bowtie_base_index" type="galaxy.datatypes.ngsindex:BowtieBaseIndex" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="csfasta" type="galaxy.datatypes.sequence:csFasta" display_in_upload="true"/>
    <datatype extension="data" type="galaxy.datatypes.data:Data" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576"/>
    <datatype extension="binary" type="galaxy.datatypes.binary:Binary" mimetype="application/octet-stream" max_optional_metadata_filesize="1048576"/>
    <datatype extension="d3_hierarchy" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="true"/>
    <datatype extension="imgt.json" type="galaxy.datatypes.text:ImgtJson" mimetype="application/json" display_in_upload="True"/>
    <datatype extension="geojson" type="galaxy.datatypes.text:GeoJson" mimetype="application/json" display_in_upload="True"/>
    <datatype extension="data_manager_json" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false"/>
    <datatype extension="dbn" type="galaxy.datatypes.sequence:DotBracket" display_in_upload="true" description="Dot-Bracket format is a text-based format for storing both an RNA sequence and its corresponding 2D structure." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Dbn"/>
    <datatype extension="fai" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true" description="A Fasta Index File is a text file consisting of lines each with five TAB-delimited columns : Name, Length, offset, linebases, Linewidth" description_url="http://www.htslib.org/doc/faidx.html"/>
    <datatype extension="fasta" auto_compressed_types="gz" type="galaxy.datatypes.sequence:Fasta" display_in_upload="true" description="A sequence in FASTA format consists of a single-line description, followed by lines of sequence data. The first character of the description line is a greater-than ('&gt;') symbol in the first column. All lines should be shorter than 80 characters." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Fasta">
      <converter file="fasta_to_tabular_converter.xml" target_datatype="tabular"/>
      <converter file="fasta_to_bowtie_base_index_converter.xml" target_datatype="bowtie_base_index"/>
      <converter file="fasta_to_bowtie_color_index_converter.xml" target_datatype="bowtie_color_index"/>
      <converter file="fasta_to_2bit.xml" target_datatype="twobit"/>
      <converter file="fasta_to_len.xml" target_datatype="len"/>
      <converter file="fasta_to_fai.xml" target_datatype="fai"/>
      <display file="igv/genome_fasta.xml" inherit="true"/>
    </datatype>
    <datatype extension="fastg" type="galaxy.datatypes.sequence:Fastg" display_in_upload="true" description="fastg format faithfully represents genome assemblies in the face of allelic polymorphism and assembly uncertainty" description_url="http://fastg.sourceforge.net/FASTG_Spec_v1.00.pdf"/>
    <datatype extension="fastq" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:Fastq" display_in_upload="true" description="FASTQ format is a text-based format for storing both a biological sequence (usually nucleotide sequence) and its corresponding quality scores." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Fastq">
      <converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/>
    </datatype>
    <datatype extension="fastqsanger" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqSanger" display_in_upload="true" description="Sanger variant of the FASTQ format: phred+33">
      <converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/>
    </datatype>
    <datatype extension="fastqsolexa" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqSolexa" display_in_upload="true" description="Solexa variant of the FASTQ format: solexa+64" description_url="https://wiki.galaxyproject.org/Learn/Datatypes#FastqSolexa">
      <converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/>
    </datatype>
    <datatype extension="fastqcssanger" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqCSSanger" display_in_upload="true" description="sequence in in color space phred scored quality values 0:93 represented by ASCII 33:126">
      <converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/>
    </datatype>
    <datatype extension="fastqillumina" auto_compressed_types="gz,bz2" type="galaxy.datatypes.sequence:FastqIllumina" display_in_upload="true" description="Sanger variant of the FASTQ format: phred+64">
      <converter file="fastq_to_fqtoc.xml" target_datatype="fqtoc"/>
    </datatype>
    <datatype extension="fqtoc" type="galaxy.datatypes.sequence:SequenceSplitLocations" display_in_upload="true"/>
    <datatype extension="eland" type="galaxy.datatypes.tabular:Eland" display_in_upload="true"/>
    <datatype extension="elandmulti" type="galaxy.datatypes.tabular:ElandMulti" display_in_upload="true"/>
    <datatype extension="genetrack" type="galaxy.datatypes.tracks:GeneTrack">
      <!-- <display file="genetrack.xml" /> -->
    </datatype>
    <datatype extension="gff" type="galaxy.datatypes.interval:Gff" display_in_upload="true" description="GFF lines have nine required fields that must be tab-separated." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#GFF">
      <converter file="gff_to_bed_converter.xml" target_datatype="bed"/>
      <converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/>
      <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <converter file="gff_to_fli_converter.xml" target_datatype="fli"/>
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
      <converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
      <display file="ensembl/ensembl_gff.xml" inherit="true"/>
      <display file="igv/gff.xml" inherit="true"/>
      <!-- <display file="gbrowse/gbrowse_gff.xml" inherit="true" /> -->
    </datatype>
    <datatype extension="gff3" auto_compressed_types="gz,bz2" type="galaxy.datatypes.interval:Gff3" display_in_upload="true" description="The GFF3 format addresses the most common extensions to GFF, while preserving backward compatibility with previous formats." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#GFF3"/>
    <datatype extension="gif" type="galaxy.datatypes.images:Gif" mimetype="image/gif"/>
    <datatype extension="gmaj.zip" type="galaxy.datatypes.images:Gmaj" mimetype="application/zip"/>
    <datatype extension="graph_dot" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="gtf" type="galaxy.datatypes.interval:Gtf" display_in_upload="true">
      <converter file="gff_to_interval_index_converter.xml" target_datatype="interval_index"/>
      <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <display file="igb/gtf.xml"/>
    </datatype>
    <datatype extension="toolshed.gz" type="galaxy.datatypes.binary:Binary" mimetype="multipart/x-gzip" subclass="true"/>
    <datatype extension="h5" type="galaxy.datatypes.binary:H5" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="loom" type="galaxy.datatypes.binary:Loom" description="An HDF5-based Loom File" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="h5ad" type="galaxy.datatypes.binary:Anndata" description="An HDF5-based anndata File" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="mz5" type="galaxy.datatypes.binary:H5" subclass="true" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="hyphy_results.json" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false"/>
    <datatype extension="hivtrace" type="galaxy.datatypes.text:Json" mimetype="application/json" subclass="true" display_in_upload="false"/>
    <datatype extension="cool" type="galaxy.datatypes.binary:Cool" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="mcool" type="galaxy.datatypes.binary:MCool" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="h5mlm" type="galaxy.datatypes.binary:H5MLM" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="html" type="galaxy.datatypes.text:Html" mimetype="text/html"/>
    <datatype extension="interval" type="galaxy.datatypes.interval:Interval" display_in_upload="true" description="File must start with definition line in the following format (columns may be in any order).">
      <converter file="interval_to_bed_converter.xml" target_datatype="bed"/>
      <converter file="interval_to_bedstrict_converter.xml" target_datatype="bedstrict"/>
      <converter file="interval_to_bed6_converter.xml" target_datatype="bed6"/>
      <converter file="interval_to_bed12_converter.xml" target_datatype="bed12"/>
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
      <converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
      <converter file="interval_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <!-- <display file="ucsc/interval_as_bed.xml" inherit="true" /> -->
      <display file="ensembl/ensembl_interval_as_bed.xml" inherit="true"/>
      <display file="gbrowse/gbrowse_interval_as_bed.xml" inherit="true"/>
      <display file="rviewer/bed.xml" inherit="true"/>
      <display file="igv/interval_as_bed.xml" inherit="true"/>
    </datatype>
    <datatype extension="jellyfish" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" description="Jellyfish database files are k-mer counts in binary format with a readable head. They are operated on and converted to human-readable text through jellyfish commands." />

    <!-- ISA data types -->
    <datatype extension="isa-tab" type="galaxy.datatypes.isa:IsaTab" mimetype="application/isa-tools" display_in_upload="true" description="ISA-Tab data type." description_url="https://isa-tools.org"/>
    <datatype extension="isa-json" type="galaxy.datatypes.isa:IsaJson" mimetype="application/isa-tools" display_in_upload="true" description="ISA-JSON data type." description_url="https://isa-tools.org"/>

    <datatype extension="picard_interval_list" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true">
      <converter file="picard_interval_list_to_bed6_converter.xml" target_datatype="bed6"/>
    </datatype>
    <datatype extension="gatk_interval" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="gatk_report" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="gatk_dbsnp" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true"/>
    <datatype extension="gatk_tranche" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true"/>
    <datatype extension="gatk_recal" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true"/>
    <datatype extension="hhr" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="jpg" type="galaxy.datatypes.images:Jpg" mimetype="image/jpeg"/>
    <datatype extension="tiff" type="galaxy.datatypes.images:Tiff" mimetype="image/tiff" display_in_upload="true"/>
    <datatype extension="tf2" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false"/>
    <datatype extension="tf8" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false"/>
    <datatype extension="btf" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false"/>
    <datatype extension="tif" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false"/>
    <datatype extension="svs" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false"/>
    <datatype extension="scn" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false"/>
    <datatype extension="bif" type="galaxy.datatypes.images:Tiff" subclass="true" display_in_upload="false"/>
    <datatype extension="ome.tiff" type="galaxy.datatypes.images:OMETiff" display_in_upload="true">
      <display file="image/avivator.xml"/>
    </datatype>
    <datatype extension="vms" type="galaxy.datatypes.images:Hamamatsu" mimetype="image/hamamatsu"/>
    <datatype extension="vmu" type="galaxy.datatypes.images:Hamamatsu" subclass="true" display_in_upload="false"/>
    <datatype extension="ndpi" type="galaxy.datatypes.images:Hamamatsu" subclass="true" display_in_upload="false"/>
    <datatype extension="mrxs" type="galaxy.datatypes.images:Mirax" mimetype="image/mirax"/>
    <datatype extension="svslide" type="galaxy.datatypes.images:Sakura" mimetype="image/sakura"/>
    <datatype extension="bmp" type="galaxy.datatypes.images:Bmp" mimetype="image/bmp"/>
    <datatype extension="im" type="galaxy.datatypes.images:Im" mimetype="image/im"/>
    <datatype extension="pcd" type="galaxy.datatypes.images:Pcd" mimetype="image/pcd"/>
    <datatype extension="pcx" type="galaxy.datatypes.images:Pcx" mimetype="image/pcx"/>
    <datatype extension="ppm" type="galaxy.datatypes.images:Ppm" mimetype="image/ppm"/>
    <datatype extension="psd" type="galaxy.datatypes.images:Psd" mimetype="image/psd"/>
    <datatype extension="xbm" type="galaxy.datatypes.images:Xbm" mimetype="image/xbm"/>
    <datatype extension="xpm" type="galaxy.datatypes.images:Xpm" mimetype="image/xpm"/>
    <datatype extension="rgb" type="galaxy.datatypes.images:Rgb" mimetype="image/rgb"/>
    <datatype extension="pbm" type="galaxy.datatypes.images:Pbm" mimetype="image/pbm"/>
    <datatype extension="pgm" type="galaxy.datatypes.images:Pgm" mimetype="image/pgm"/>
    <datatype extension="nrrd" type="galaxy.datatypes.images:Nrrd" mimetype="image/nrrd"/>
    <datatype extension="nhdr" type="galaxy.datatypes.images:Nrrd" subclass="true"/>
    <datatype extension="rna_eps" type="galaxy.datatypes.sequence:RNADotPlotMatrix" mimetype="image/eps" display_in_upload="true"/>
    <datatype extension="zip" type="galaxy.datatypes.binary:CompressedZipArchive" display_in_upload="true"/>
    <datatype extension="ncbi_genome_dataset.zip" type="galaxy.datatypes.binary:CompressedZipArchive" subclass="true" display_in_upload="true"/>
    <datatype extension="tar" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true">
      <converter file="tar_to_directory.xml" target_datatype="directory"/>
    </datatype>
    <datatype extension="directory" type="galaxy.datatypes.data:Directory">
    </datatype>
    <datatype extension="yaml" type="galaxy.datatypes.text:Yaml" display_in_upload="true" />
    <!-- Proteomics Datatypes -->
    <datatype extension="mrm" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true"/>
    <datatype extension="dta" type="galaxy.datatypes.proteomics:Dta" display_in_upload="true" />
    <datatype extension="dta2d" type="galaxy.datatypes.proteomics:Dta2d" display_in_upload="true" />
    <datatype extension="edta" type="galaxy.datatypes.proteomics:Edta" display_in_upload="true" />
    <datatype extension="pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="raw_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true"/>
    <datatype extension="peptideprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true"/>
    <datatype extension="interprophet_pepxml" type="galaxy.datatypes.proteomics:PepXml" mimetype="application/xml" subclass="true"/>
    <datatype extension="protxml" type="galaxy.datatypes.proteomics:ProtXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="paramxml" type="galaxy.datatypes.proteomics:ParamXml" mimetype="application/xml" subclass="true" display_in_upload="true" />
    <datatype extension="kroenik" type="galaxy.datatypes.proteomics:Kroenik" display_in_upload="true"/>
    <datatype extension="peplist" type="galaxy.datatypes.proteomics:PepList" display_in_upload="true"/>
    <datatype extension="psms" type="galaxy.datatypes.proteomics:PSMS" display_in_upload="true"/>
    <datatype extension="pepxml.tsv" type="galaxy.datatypes.proteomics:PepXmlReport" display_in_upload="true"/>
    <datatype extension="protxml.tsv" type="galaxy.datatypes.proteomics:ProtXmlReport" display_in_upload="true"/>
    <datatype extension="mascotdat" type="galaxy.datatypes.proteomics:MascotDat" display_in_upload="false"/>
    <datatype extension="mzid" type="galaxy.datatypes.proteomics:MzIdentML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="idxml" type="galaxy.datatypes.proteomics:IdXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="tandem" type="galaxy.datatypes.proteomics:TandemXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="sirius.ms" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="false"/>
    <datatype extension="thermo.raw" type="galaxy.datatypes.proteomics:ThermoRAW" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="brukerbaf.d.tar" type="galaxy.datatypes.binary:BafTar" display_in_upload="true"/>
    <datatype extension="agilentbrukeryep.d.tar" type="galaxy.datatypes.binary:YepTar" display_in_upload="true"/>
    <datatype extension="brukertdf.d.tar" type="galaxy.datatypes.binary:TdfTar" display_in_upload="true"/>
    <datatype extension="agilentmasshunter.d.tar" type="galaxy.datatypes.binary:MassHunterTar" display_in_upload="true"/>
    <datatype extension="watersmasslynx.raw.tar" type="galaxy.datatypes.binary:MassLynxTar" display_in_upload="true"/>
    <datatype extension="wiff.tar" type="galaxy.datatypes.binary:WiffTar" display_in_upload="true"/>
    <datatype extension="mascotxml" type="galaxy.datatypes.proteomics:MascotXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="mztab" type="galaxy.datatypes.proteomics:MzTab" display_in_upload="true"/>
    <datatype extension="mztab2" type="galaxy.datatypes.proteomics:MzTab2" display_in_upload="true"/>
    <datatype extension="mzml" type="galaxy.datatypes.proteomics:MzML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="nmrml" type="galaxy.datatypes.proteomics:NmrML" mimetype="application/xml" display_in_upload="true" description="nmrML is an open mark-up language for NMR data." description_url="http://nmrml.org/schema/"/>
    <datatype extension="meryldb" type="galaxy.datatypes.binary:Meryldb" subclass="true" display_in_upload="true" description="MerylDB is a tar.gz archive containing 64 binaries + 64 indexes." />
    <datatype extension="bref3" type="galaxy.datatypes.binary:Bref3" display_in_upload="true" description="Bref3 format is a binary format for storing phased, non-missing genotypes for a list of samples. More information in https://faculty.washington.edu/browning/beagle/bref3.14May18.pdf" />
    <datatype extension="mgf" type="galaxy.datatypes.proteomics:Mgf" display_in_upload="true"/>
    <datatype extension="wiff" type="galaxy.datatypes.proteomics:Wiff" display_in_upload="true"/>
    <datatype extension="mzxml" type="galaxy.datatypes.proteomics:MzXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="mzdata" type="galaxy.datatypes.proteomics:MzData" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="ms2" type="galaxy.datatypes.proteomics:Ms2" display_in_upload="true"/>
    <datatype extension="mzq" type="galaxy.datatypes.proteomics:MzQuantML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="sqlite" type="galaxy.datatypes.binary:SQlite" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="mz.sqlite" type="galaxy.datatypes.binary:MzSQlite" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="osw" type="galaxy.datatypes.binary:OSW" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="pqp" type="galaxy.datatypes.binary:PQP" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="traml" type="galaxy.datatypes.proteomics:TraML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="trafoxml" type="galaxy.datatypes.proteomics:TrafoXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="featurexml" type="galaxy.datatypes.proteomics:FeatureXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="consensusxml" type="galaxy.datatypes.proteomics:ConsensusXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="uniprotxml" type="galaxy.datatypes.proteomics:UniProtXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="xquest.xml" type="galaxy.datatypes.proteomics:XquestXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="spec.xml" type="galaxy.datatypes.proteomics:XquestSpecXML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="qcml" type="galaxy.datatypes.proteomics:QCML" mimetype="application/xml" display_in_upload="true" description="Quality control data in XML format (https://code.google.com/p/qcml/)."/>
    <datatype extension="msp" type="galaxy.datatypes.proteomics:Msp" display_in_upload="true"/>
    <datatype extension="splib_noindex" type="galaxy.datatypes.proteomics:SPLibNoIndex" display_in_upload="true"/>
    <datatype extension="splib" type="galaxy.datatypes.proteomics:SPLib" display_in_upload="true"/>
    <datatype extension="blib" type="galaxy.datatypes.binary:BlibSQlite" display_in_upload="true"/>
    <datatype extension="dlib" type="galaxy.datatypes.binary:DlibSQlite" display_in_upload="true"/>
    <datatype extension="elib" type="galaxy.datatypes.binary:ElibSQlite" display_in_upload="true"/>
    <datatype extension="hlf" type="galaxy.datatypes.proteomics:XHunterAslFormat" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="idpdb" type="galaxy.datatypes.binary:IdpDB" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="sf3" type="galaxy.datatypes.proteomics:Sf3" display_in_upload="true"/>
    <datatype extension="cps" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true"/>
    <datatype extension="ct" type="galaxy.datatypes.tabular:ConnectivityTable" display_in_upload="true"/>
    <datatype extension="postgresql" type="galaxy.datatypes.binary:PostgresqlArchive" display_in_upload="True"/>
    <datatype extension="searchgui_archive" type="galaxy.datatypes.binary:SearchGuiArchive" display_in_upload="true"/>
    <datatype extension="fast5.tar" type="galaxy.datatypes.binary:Fast5Archive" display_in_upload="true"/>
    <datatype extension="fast5.tar.gz" type="galaxy.datatypes.binary:Fast5ArchiveGz" display_in_upload="true"/>
    <datatype extension="fast5.tar.bz2" type="galaxy.datatypes.binary:Fast5ArchiveBz2" display_in_upload="true"/>
    <datatype extension="peptideshaker_archive" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
    <datatype extension="percin" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
    <datatype extension="percout" type="galaxy.datatypes.xml:GenericXml" subclass="true"/>
    <datatype extension="hardklor" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
    <datatype extension="kronik" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
    <datatype extension="imzml" type="galaxy.datatypes.proteomics:ImzML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="analyze75" type="galaxy.datatypes.images:Analyze75" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="nii1" auto_compressed_types="gz" type="galaxy.datatypes.images:Nifti1" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="nii2" auto_compressed_types="gz" type="galaxy.datatypes.images:Nifti2" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="gii" auto_compressed_types="gz" type="galaxy.datatypes.images:Gifti" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="tck" type="galaxy.datatypes.images:Tck" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="trk" type="galaxy.datatypes.images:Trk" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="mrc" type="galaxy.datatypes.images:Mrc2014" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="star" type="galaxy.datatypes.images:Star" display_in_upload="true" />
    <datatype extension="peff" type="galaxy.datatypes.proteomics:PEFF" display_in_upload="true" />
    <datatype extension="toml" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <!-- End Proteomics Datatypes -->
    <!-- FlowCytometry -->
    <datatype extension="fcs" type="galaxy.datatypes.flow:FCS" mimetype="application/octet-stream" display_in_upload="true" description="A FCS binary sequence file with a '.fcs' file extension." />
    <datatype extension="flowtext" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="A Flow text file with a '.flowtext' file extension." />
    <datatype extension="flowclr" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="A Flow text file containing population information with a '.flowclr' file extension." />
    <datatype extension="flowmfi" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="A Flow MFI file with a '.flowmfi' file extension." />
    <datatype extension="flowstat1" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="A Flow Stats file with a '.flowstat1' file extension." />
    <datatype extension="flowstat2" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="A Flow Stats file with a '.flowstat2' file extension." />
    <datatype extension="flowstat3" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="A Flow Stats file with a '.flowstat3' file extension." />
    <datatype extension="flowscore" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="A Flow Score file with a '.flowscore' file extension." />
    <datatype extension="flowframe" type="galaxy.datatypes.binary:RData" mimetype="application/octet-stream" subclass="true" display_in_upload="true" description="Data saved from a R session containing just a flowFrame object" />
    <datatype extension="fsom" type="galaxy.datatypes.binary:RData" mimetype="application/octet-stream" subclass="true" display_in_upload="true" description="Data saved from a R session containing just a fSOM object" />
    <datatype extension="flowset" type="galaxy.datatypes.binary:RData" mimetype="application/octet-stream" subclass="true" display_in_upload="true" description="Data saved from a R session containing just a flowSet object" />
    <!-- MetaCyto Datatypes -->
    <datatype extension="metacyto_clr.txt" type="galaxy.datatypes.tabular:Tabular" subclass="true" mimetype="text/tab-separated-values" display_in_upload="true" description="List of clusters used in MetaCyto analyses" />
    <datatype extension="metacyto_summary.txt" type="galaxy.datatypes.metacyto:mSummary" mimetype="text/tab-separated-values" display_in_upload="true" description="Summary table generated by MetaCyto preprocessing of FCS files" />
    <datatype extension="metacyto_stats.txt" type="galaxy.datatypes.metacyto:mStats" mimetype="text/tab-separated-values" display_in_upload="true" description="Table of statistics generated by a MetaCyto analysis" />
    <!-- End FlowCytometry -->
    <datatype extension="deeptools_compute_matrix_archive" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
    <datatype extension="deeptools_coverage_matrix" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" display_in_upload="true"/>
    <datatype extension="netcdf" type="galaxy.datatypes.binary:NetCDF" mimetype="application/octet-stream" display_in_upload="true" description="Format used by netCDF software library for writing and reading chromatography-MS data files."/>
    <datatype extension="eps" type="galaxy.datatypes.images:Eps" mimetype="image/eps"/>
    <datatype extension="rast" type="galaxy.datatypes.images:Rast" mimetype="image/rast"/>
    <datatype extension="laj" type="galaxy.datatypes.images:Laj"/>
    <datatype extension="lav" type="galaxy.datatypes.sequence:Lav" display_in_upload="true" description="Lav is the primary output format for BLASTZ.  The first line of a .lav file begins with #:lav.."/>
    <datatype extension="maf" type="galaxy.datatypes.sequence:Maf" display_in_upload="true" description="TBA and multiz multiple alignment format.  The first line of a .maf file begins with ##maf. This word is followed by white-space-separated 'variable=value' pairs. There should be no white space surrounding the '='." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#MAF">
      <converter file="maf_to_fasta_converter.xml" target_datatype="fasta"/>
      <converter file="maf_to_interval_converter.xml" target_datatype="interval"/>
    </datatype>
    <datatype extension="mafcustomtrack" type="galaxy.datatypes.sequence:MafCustomTrack">
      <display file="ucsc/maf_customtrack.xml"/>
    </datatype>
    <datatype extension="mtx" type="galaxy.datatypes.tabular:MatrixMarket" display_in_upload="true"/>
    <datatype extension="cmap" type="galaxy.datatypes.tabular:CMAP" display_in_upload="true" description="The Bionano Genomics cmap format provides location information for label sites within a genome map or an in silico digestion of a reference or sequence data. A CMAP file contains two sections, header and the map information block" description_url="https://bionanogenomics.com/wp-content/uploads/2017/03/30039-CMAP-File-Format-Specification-Sheet.pdf" />
    <datatype extension="encodepeak" type="galaxy.datatypes.interval:ENCODEPeak" display_in_upload="true">
      <converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
      <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
    </datatype>
    <datatype extension="pdf" type="galaxy.datatypes.images:Pdf" mimetype="application/pdf" display_in_upload="true"/>
    <datatype extension="pileup" type="galaxy.datatypes.tabular:Pileup" display_in_upload="true">
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
      <converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
    </datatype>
    <datatype extension="obo" type="galaxy.datatypes.text:Obo" mimetype="text/html" display_in_upload="true"/>
    <datatype extension="owl" type="galaxy.datatypes.xml:Owl" mimetype="text/html" display_in_upload="true"/>
    <datatype extension="png" type="galaxy.datatypes.images:Png" mimetype="image/png" display_in_upload="true"/>
    <datatype extension="qual" type="galaxy.datatypes.qualityscore:QualityScore"/>
    <datatype extension="qualsolexa" type="galaxy.datatypes.qualityscore:QualityScoreSolexa" display_in_upload="true"/>
    <datatype extension="qualillumina" type="galaxy.datatypes.qualityscore:QualityScoreIllumina" display_in_upload="true"/>
    <datatype extension="qualsolid" type="galaxy.datatypes.qualityscore:QualityScoreSOLiD" display_in_upload="true"/>
    <datatype extension="qual454" type="galaxy.datatypes.qualityscore:QualityScore454" display_in_upload="true"/>
    <datatype extension="roadmaps" type="galaxy.datatypes.assembly:Roadmaps" display_in_upload="false"/>
    <datatype extension="sam" type="galaxy.datatypes.tabular:Sam" display_in_upload="true">
      <converter file="sam_to_unsorted_bam.xml" target_datatype="unsorted.bam"/>
      <converter file="to_coordinate_sorted_bam.xml" target_datatype="bam"/>
      <converter file="to_qname_sorted_bam.xml" target_datatype="qname_sorted.bam"/>
      <converter file="sam_to_bigwig_converter.xml" target_datatype="bigwig"/>
    </datatype>
    <datatype extension="scf" type="galaxy.datatypes.binary:Scf" mimetype="application/octet-stream" display_in_upload="true" description="A binary sequence file in 'scf' format with a '.scf' file extension.  You must manually select this 'File Format' when uploading the file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Scf"/>
    <datatype extension="sequences" type="galaxy.datatypes.assembly:Sequences" display_in_upload="false"/>
    <datatype extension="shp" type="galaxy.datatypes.gis:Shapefile" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="snpeffdb" type="galaxy.datatypes.text:SnpEffDb" display_in_upload="true"/>
    <datatype extension="snpsiftdbnsfp" type="galaxy.datatypes.text:SnpSiftDbNSFP" display_in_upload="true"/>
    <datatype extension="dbnsfp.tabular" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true">
      <converter file="tabular_to_dbnsfp.xml" target_datatype="snpsiftdbnsfp"/>
    </datatype>
    <datatype extension="sff" type="galaxy.datatypes.binary:Sff" mimetype="application/octet-stream" display_in_upload="true" description="A binary file in 'Standard Flowgram Format' with a '.sff' file extension." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Sff"/>
    <datatype extension="sra" type="galaxy.datatypes.binary:Sra" mimetype="application/octet-stream" display_in_upload="true" description="A binary file archive format from the NCBI Sequence Read Archive with a '.sra' file extension." description_url="http://www.ncbi.nlm.nih.gov/books/n/helpsra/SRA_Overview_BK/#SRA_Overview_BK.4_SRA_Data_Structure"/>
    <datatype extension="sra_manifest.tabular" type="galaxy.datatypes.tabular:SraManifest" display_in_upload="true"/>
    <datatype extension="svg" type="galaxy.datatypes.xml:GenericXml" mimetype="image/svg+xml" subclass="true"/>
    <datatype extension="taxonomy" type="galaxy.datatypes.tabular:Taxonomy" display_in_upload="true"/>
    <datatype extension="tabular" type="galaxy.datatypes.tabular:Tabular" auto_compressed_types="gz" display_in_upload="true" description="Any data in tab delimited format (tabular)." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Tabular_.28tab_delimited.29">
      <converter file="tabular_to_csv.xml" target_datatype="csv"/>
    </datatype>
    <datatype extension="twobit" type="galaxy.datatypes.binary:TwoBit" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="sqmass" type="galaxy.datatypes.binary:SQmass" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="gemini.sqlite" type="galaxy.datatypes.binary:GeminiSQLite" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="chira.sqlite" type="galaxy.datatypes.binary:ChiraSQLite" mimetype="application/octet-stream" display_in_upload="true" />
    <datatype extension="cuffdiff.sqlite" type="galaxy.datatypes.binary:CuffDiffSQlite" display_in_upload="true"/>
    <datatype extension="gafa.sqlite" type="galaxy.datatypes.binary:GAFASQLite" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="ncbitaxonomy.sqlite" type="galaxy.datatypes.binary:NcbiTaxonomySQlite" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="txt" type="galaxy.datatypes.data:Text" display_in_upload="true" description="Any text file." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Plain_text"/>
    <datatype extension="linecount" type="galaxy.datatypes.data:LineCount" display_in_upload="false"/>
    <datatype extension="memepsp" type="galaxy.datatypes.sequence:MemePsp" display_in_upload="true" description="The MEME Position Specific Priors (PSP) format includes the name of the sequence for which a prior distribution corresponds." description_url="http://meme-suite.org/doc/psp-format.html"/>
    <datatype extension="memexml" type="galaxy.datatypes.xml:MEMEXml" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="cisml" type="galaxy.datatypes.xml:CisML" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="xml" type="galaxy.datatypes.xml:GenericXml" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="dzi" type="galaxy.datatypes.xml:Dzi" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="vcf" type="galaxy.datatypes.tabular:Vcf" display_in_upload="true">
      <converter file="interval_to_bgzip_converter.xml" target_datatype="bgzip"/>
      <converter file="vcf_to_vcf_bgzip_converter.xml" target_datatype="vcf_bgzip"/>
      <converter file="interval_to_tabix_converter.xml" target_datatype="tabix" depends_on="bgzip"/>
      <converter file="bed_gff_or_vcf_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <display file="ucsc/vcf.xml"/>
      <display file="igv/vcf.xml"/>
      <display file="rviewer/vcf.xml" inherit="true"/>
      <display file="iobio/vcf.xml"/>
    </datatype>
    <datatype extension="bcf" type="galaxy.datatypes.binary:Bcf" mimetype="application/octet-stream" display_in_upload="true">
      <converter file="bcf_bcf_uncompressed_converter.xml" target_datatype="bcf_uncompressed"/>
    </datatype>
    <!-- bcf_bgzip is just an alias for bcf for backward-compatibility -->
    <datatype extension="bcf_bgzip" type="galaxy.datatypes.binary:Bcf" subclass="true"/>
    <datatype extension="bcf_uncompressed" type="galaxy.datatypes.binary:BcfUncompressed" mimetype="application/octet-stream" display_in_upload="true">
      <converter file="bcf_bcf_uncompressed_converter.xml" target_datatype="bcf"/>
    </datatype>
    <datatype extension="velvet" type="galaxy.datatypes.assembly:Velvet" display_in_upload="true"/>
    <datatype extension="wig" type="galaxy.datatypes.interval:Wiggle" display_in_upload="true" description="The wiggle format is line-oriented.  Wiggle data is preceded by a track definition line, which adds a number of options for controlling the default display of this track." description_url="https://wiki.galaxyproject.org/Learn/Datatypes#Wig">
      <converter file="wig_to_bigwig_converter.xml" target_datatype="bigwig"/>
      <converter file="wiggle_to_simple_converter.xml" target_datatype="interval"/>
      <!-- <display file="gbrowse/gbrowse_wig.xml" /> -->
      <display file="igb/wig.xml"/>
    </datatype>
    <datatype extension="interval_index" type="galaxy.datatypes.binary:Binary" subclass="true"/>
    <datatype extension="odgi" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs self index used by odgi." display_in_upload="true"/>
    <datatype extension="vg" type="galaxy.datatypes.binary:CompressedArchive" subclass="true" description="Genomic variation graphs." display_in_upload="true"/>
    <datatype extension="xg" type="galaxy.datatypes.binary:Binary" subclass="true" description="Genomic variation graphs with vg index." display_in_upload="true"/>
    <datatype extension="protobuf2" type="galaxy.datatypes.binary:Binary" subclass="true" description="Protocol Buffers (Protobuf) is data format for serializing structured data." display_in_upload="true"/>
    <datatype extension="protobuf3" type="galaxy.datatypes.binary:Binary" subclass="true" description="Protocol Buffers (Protobuf) is data format for serializing structured data." display_in_upload="true"/>
    <datatype extension="onnx" type="galaxy.datatypes.binary:Binary" subclass="true" description="ONNX (Open neural network exchange) is data format for storing and sharing machine learning and deep learning models." display_in_upload="true"/>
    <datatype extension="tabix" type="galaxy.datatypes.binary:Binary" subclass="true"/>
    <datatype extension="bgzip" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true"/>
    <datatype extension="vcf_bgzip" type="galaxy.datatypes.tabular:VcfGz" display_in_upload="true">
      <display file="igv/vcf.xml"/>
      <converter file="vcf_bgzip_to_tabix_converter.xml" target_datatype="tabix"/>
      <converter file="gz_to_uncompressed.xml" target_datatype="vcf"/>
    </datatype>
    <datatype extension="bus" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" />
    <datatype extension="kallisto.idx" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" />
    <!-- Phylogenetic tree datatypes -->
    <datatype extension="phyloxml" type="galaxy.datatypes.xml:Phyloxml" display_in_upload="true"/>
    <datatype extension="newick" type="galaxy.datatypes.data:Newick" display_in_upload="true"/>
    <datatype extension="nhx" type="galaxy.datatypes.data:Newick" subclass="true" display_in_upload="true"/>
    <datatype extension="nex" type="galaxy.datatypes.data:Nexus" display_in_upload="true"/>
    <datatype extension="iqtree" type="galaxy.datatypes.text:IQTree"/>
    <datatype extension="mldist" type="galaxy.datatypes.mothur:SquareDistanceMatrix"/>
    <!-- Start RGenetics Datatypes -->
    <datatype extension="affybatch" type="galaxy.datatypes.genetics:Affybatch" display_in_upload="true"/>
    <!-- eigenstrat pedigree input file -->
    <datatype extension="eigenstratgeno" type="galaxy.datatypes.genetics:Eigenstratgeno"/>
    <!-- eigenstrat pca output file for adjusted eigenQTL eg -->
    <datatype extension="eigenstratpca" type="galaxy.datatypes.genetics:Eigenstratpca"/>
    <datatype extension="eset" type="galaxy.datatypes.genetics:Eset" display_in_upload="true"/>
    <!-- fbat/pbat format pedigree (header row of marker names) -->
    <datatype extension="fped" type="galaxy.datatypes.genetics:Fped" display_in_upload="true"/>
    <!-- phenotype file - fbat format -->
    <datatype extension="fphe" type="galaxy.datatypes.genetics:Fphe" display_in_upload="true" mimetype="text/html"/>
    <!-- genome graphs ucsc file - first col is always marker then numeric values to plot -->
    <datatype extension="gg" type="galaxy.datatypes.genetics:GenomeGraphs"/>
    <!-- part of linkage format pedigree -->
    <!-- information redundancy (LD) filtered plink pbed -->
    <datatype extension="ldindep" type="galaxy.datatypes.genetics:ldIndep" display_in_upload="true">
    </datatype>
    <datatype extension="malist" type="galaxy.datatypes.genetics:MAlist" display_in_upload="true"/>
    <!-- linkage format pedigree (separate .map file) -->
    <datatype extension="lped" type="galaxy.datatypes.genetics:Lped" display_in_upload="true">
      <converter file="lped_to_fped_converter.xml" target_datatype="fped"/>
      <converter file="lped_to_pbed_converter.xml" target_datatype="pbed"/>
    </datatype>
    <!-- plink compressed file - has bed extension unfortunately -->
    <datatype extension="pbed" type="galaxy.datatypes.genetics:Pbed" display_in_upload="true">
      <converter file="pbed_to_lped_converter.xml" target_datatype="lped"/>
      <converter file="pbed_ldreduced_converter.xml" target_datatype="ldindep"/>
    </datatype>
    <datatype extension="pheno" type="galaxy.datatypes.genetics:Pheno"/>
    <!-- phenotype file - plink format -->
    <datatype extension="pphe" type="galaxy.datatypes.genetics:Pphe" display_in_upload="true" mimetype="text/html"/>
    <datatype extension="rexpbase" type="galaxy.datatypes.genetics:RexpBase"/>
    <datatype extension="rgenetics" type="galaxy.datatypes.genetics:Rgenetics"/>
    <datatype extension="snptest" type="galaxy.datatypes.genetics:Snptest" display_in_upload="true"/>
    <datatype extension="snpmatrix" type="galaxy.datatypes.genetics:SNPMatrix" display_in_upload="true"/>
    <!-- deprecated, should use excel.xls -->
    <datatype extension="xls" type="galaxy.datatypes.binary:ExcelXls"/>
    <!-- End RGenetics Datatypes -->
    <datatype extension="ipynb" type="galaxy.datatypes.text:Ipynb" display_in_upload="true"/>
    <datatype extension="json" type="galaxy.datatypes.text:Json" display_in_upload="true"/>
    <datatype extension="expression.json" type="galaxy.datatypes.text:ExpressionJson" display_in_upload="true"/>
    <!-- graph datatypes -->
    <datatype extension="xgmml" type="galaxy.datatypes.graph:Xgmml" display_in_upload="true"/>
    <datatype extension="sif" type="galaxy.datatypes.graph:Sif" display_in_upload="true"/>
    <!-- datatypes storing triples -->
    <datatype extension="triples" type="galaxy.datatypes.triples:Triples" display_in_upload="false"/>
    <datatype extension="hdt" type="galaxy.datatypes.triples:HDT" display_in_upload="true"/>
    <datatype extension="nt" type="galaxy.datatypes.triples:NTriples" display_in_upload="true"/>
    <datatype extension="n3" type="galaxy.datatypes.triples:N3" display_in_upload="true"/>
    <datatype extension="ttl" type="galaxy.datatypes.triples:Turtle" display_in_upload="true"/>
    <datatype extension="rdf" type="galaxy.datatypes.triples:Rdf" display_in_upload="true"/>
    <datatype extension="jsonld" type="galaxy.datatypes.triples:Jsonld" display_in_upload="true"/>
    <!-- Excel datatypes -->
    <datatype extension="excel.xls" type="galaxy.datatypes.binary:ExcelXls" display_in_upload="true"/>
    <datatype extension="xlsx" type="galaxy.datatypes.binary:Xlsx" display_in_upload="true"/>
    <datatype extension="btwisted" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="cai" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="cat_db" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="charge" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="checktrans" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="chips" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="codcmp" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="coderet" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="compseq" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="cpgplot" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="cpgreport" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="cusp" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="cut" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="dan" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="digest" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="dreg" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="einverted" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="epestfind" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="equicktandem" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="est2genome" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="etandem" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="freak" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="fuzznuc" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="fuzzpro" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="fuzztran" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="garnier" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="geecee" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="helixturnhelix" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="hmoment" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="isochore" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="match" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="nametable" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="needle" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="newcpgreport" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="newcpgseek" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="noreturn" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="palindrome" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="pepcoil" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="pepinfo" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="pepstats" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="polydot" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="preg" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="prettyseq" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="primersearch" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="showfeat" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="showorf" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="sixpack" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="strider" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="supermatcher" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="syco" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="textsearch" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="vectorstrip" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="wobble" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="wordcount" type="galaxy.datatypes.data:Text" subclass="true"/>
    <!-- Report formats http://emboss.sourceforge.net/docs/themes/ReportFormats.html -->
    <datatype extension="dbmotif" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="diffseq" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="excel" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="feattable" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="motif" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="regions" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="seqtable" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="simple" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="table" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="tagseq" type="galaxy.datatypes.data:Text" subclass="true"/>
    <!-- Sequence formats http://emboss.sourceforge.net/docs/themes/SequenceFormats.html -->
    <datatype extension="acedb" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="clustal" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="codata" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="embl" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="fitch" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="gcg" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="genbank" auto_compressed_types="gz" sniff_compressed_types="true" type="galaxy.datatypes.sequence:Genbank" display_in_upload="True">
      <display file="igv/genbank.xml"/>
    </datatype>
    <datatype extension="hennig86" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="ig" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="jackknifer" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="jackknifernon" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="mega" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="meganon" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="ncbi" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="nexus" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="nexusnon" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="phylip" type="galaxy.datatypes.phylip:Phylip" display_in_upload="true"/>
    <datatype extension="phylipnon" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="pir" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="staden" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="swiss" type="galaxy.datatypes.data:Text" subclass="true"/>
    <!-- Alignment Formats http://emboss.sourceforge.net/docs/themes/AlignFormats.html -->
    <datatype extension="msf" type="galaxy.datatypes.msa:Msf" />
    <datatype extension="markx0" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="markx1" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="markx10" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="markx2" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="markx3" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="pair" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="score" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="srs" type="galaxy.datatypes.data:Text" subclass="true"/>
    <datatype extension="srspair" type="galaxy.datatypes.data:Text" subclass="true"/>
    <!-- Annotation Datatypes -->
    <datatype extension="snaphmm" type="galaxy.datatypes.annotation:SnapHmm" display_in_upload="true"/>
    <datatype extension="augustus" type="galaxy.datatypes.annotation:Augustus" display_in_upload="true"/>
    <datatype extension="icm" type="galaxy.datatypes.binary:ICM" display_in_upload="true"/>
    <!-- MSA Datatypes -->
    <datatype extension="cm" type="galaxy.datatypes.msa:InfernalCM" display_in_upload="False"/>
    <datatype extension="hmm2" type="galaxy.datatypes.msa:Hmmer2" display_in_upload="true"/>
    <datatype extension="hmm3" type="galaxy.datatypes.msa:Hmmer3" display_in_upload="true"/>
    <datatype extension="stockholm" type="galaxy.datatypes.msa:Stockholm_1_0" display_in_upload="true"/>
    <datatype extension="xmfa" type="galaxy.datatypes.msa:MauveXmfa" display_in_upload="true"/>
    <datatype extension="cel" type="galaxy.datatypes.microarrays:Cel" display_in_upload="true"/>
    <datatype extension="gpr" type="galaxy.datatypes.microarrays:Gpr" display_in_upload="true"/>
    <datatype extension="gal" type="galaxy.datatypes.microarrays:Gal" display_in_upload="true"/>
    <datatype extension="rds" type="galaxy.datatypes.binary:RDS" display_in_upload="true" description="Serialized R object generated with saveRDS"/>
    <datatype extension="rdata" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" display_in_upload="true" description="Stored data from an R session genearted with save or save.img"/>
    <datatype extension="rdata.sce" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true" description="Stored RData from a SingleCellObject"/>
    <datatype extension="rdata.xcms.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.msnbase.raw" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.xcms.findchrompeaks" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.xcms.group" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.xcms.retcor" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.xcms.fillpeaks" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.camera.positive" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.camera.negative" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.camera.quick" type="galaxy.datatypes.binary:RData" mimetype="application/x-gzip" subclass="true" display_in_upload="true"/>
    <datatype extension="rdata.se" type="galaxy.datatypes.hdf5:HDF5SummarizedExperiment"  mimetype="text/html" display_in_upload="true"/>
    <datatype extension="rdock_as" type="galaxy.datatypes.binary:Binary" description="rDock active site format" subclass="true" display_in_upload="true"/>
    <datatype extension="oxlicg" type="galaxy.datatypes.binary:OxliCountGraph" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="oxling" type="galaxy.datatypes.binary:OxliNodeGraph" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="oxlits" type="galaxy.datatypes.binary:OxliTagSet" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="oxlist" type="galaxy.datatypes.binary:OxliStopTags" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="oxliss" type="galaxy.datatypes.binary:OxliSubset" mimetype="application/octet-stream" display_in_upload="true"/>
    <datatype extension="oxligl" type="galaxy.datatypes.binary:OxliGraphLabels" mimetype="application/octet-stream" display_in_upload="true"/>
    <!-- Constructive solid geometry datatypes -->
    <datatype extension="stl" type="galaxy.datatypes.constructive_solid_geometry:STL" display_in_upload="true"/>
    <datatype extension="plyascii" type="galaxy.datatypes.constructive_solid_geometry:PlyAscii" display_in_upload="true"/>
    <datatype extension="plybinary" type="galaxy.datatypes.constructive_solid_geometry:PlyBinary" display_in_upload="true"/>
    <datatype extension="vtkascii" type="galaxy.datatypes.constructive_solid_geometry:VtkAscii" display_in_upload="true"/>
    <datatype extension="vtkbinary" type="galaxy.datatypes.constructive_solid_geometry:VtkBinary" display_in_upload="true"/>
    <!-- Metagenomic Datatypes -->
    <datatype extension="biom1" type="galaxy.datatypes.text:Biom1" display_in_upload="true" mimetype="application/json">
      <display file="biom/biom_simple.xml"/>
      <converter file="biom.xml" target_datatype="biom2"/>
    </datatype>
    <datatype extension="biom2" type="galaxy.datatypes.binary:Biom2" mimetype="application/octet-stream" display_in_upload="true">
      <converter file="biom.xml" target_datatype="biom1"/>
    </datatype>
    <datatype extension="msh" type="galaxy.datatypes.binary:MashSketch" display_in_upload="True" />
    <!-- Strand-specific Coordinate Count Datatype used by the Center for Eukaryotic Gene Regulation labs at Penn State -->
    <datatype extension="scidx" type="galaxy.datatypes.interval:ScIdx" display_in_upload="true"/>
    <!--Cheminformatics Datatypes -->
    <datatype extension="smi" type="galaxy.datatypes.molecules:SMILES" display_in_upload="true">
      <!-- The ordering is important. The first one is considered as default converter in the build-in conversion function -> (as sdf)-->
      <converter file="molecules_converter.xml" target_datatype="sdf"/>
      <converter file="molecules_converter.xml" target_datatype="inchi"/>
      <converter file="molecules_converter.xml" target_datatype="cml"/>
      <converter file="smi_to_mol_converter.xml" target_datatype="mol"/>
      <converter file="molecules_converter.xml" target_datatype="mol2"/>
      <converter file="smi_to_smi_converter.xml" target_datatype="smi"/>
    </datatype>
    <datatype extension="sdf" type="galaxy.datatypes.molecules:SDF" display_in_upload="true">
      <converter file="molecules_converter.xml" target_datatype="smi"/>
      <converter file="molecules_converter.xml" target_datatype="inchi"/>
      <converter file="molecules_converter.xml" target_datatype="mol2"/>
      <converter file="molecules_converter.xml" target_datatype="cml"/>
      <display file="icn3d/icn3d_simple.xml"/>
    </datatype>
    <datatype extension="inchi" type="galaxy.datatypes.molecules:InChI" display_in_upload="true">
      <converter file="molecules_converter.xml" target_datatype="smi"/>
      <converter file="molecules_converter.xml" target_datatype="sdf"/>
      <converter file="inchi_to_mol_converter.xml" target_datatype="mol"/>
      <converter file="molecules_converter.xml" target_datatype="mol2"/>
      <converter file="molecules_converter.xml" target_datatype="cml"/>
    </datatype>
    <datatype extension="mol" type="galaxy.datatypes.molecules:MOL" display_in_upload="true">
      <converter file="molecules_converter.xml" target_datatype="smi"/>
      <converter file="molecules_converter.xml" target_datatype="sdf"/>
      <converter file="molecules_converter.xml" target_datatype="inchi"/>
      <converter file="molecules_converter.xml" target_datatype="mol2"/>
      <converter file="molecules_converter.xml" target_datatype="cml"/>
    </datatype>
    <datatype extension="mol2" type="galaxy.datatypes.molecules:MOL2" display_in_upload="true">
      <converter file="molecules_converter.xml" target_datatype="smi"/>
      <converter file="molecules_converter.xml" target_datatype="sdf"/>
      <converter file="molecules_converter.xml" target_datatype="inchi"/>
      <converter file="mol2_to_mol_converter.xml" target_datatype="mol"/>
      <converter file="molecules_converter.xml" target_datatype="cml"/>
      <display file="icn3d/icn3d_simple.xml"/>
    </datatype>
    <datatype extension="cml" type="galaxy.datatypes.molecules:CML" display_in_upload="true">
      <converter file="cml_to_smi_converter.xml" target_datatype="smi"/>
      <converter file="molecules_converter.xml" target_datatype="inchi"/>
      <converter file="molecules_converter.xml" target_datatype="sdf"/>
      <converter file="molecules_converter.xml" target_datatype="mol2"/>
    </datatype>
    <datatype extension="fps" type="galaxy.datatypes.molecules:FPS" mimetype="text/html" display_in_upload="true"/>
    <datatype extension="obfs" type="galaxy.datatypes.molecules:OBFS" mimetype="text/html" display_in_upload="true"/>
    <datatype extension="drf" type="galaxy.datatypes.molecules:DRF" display_in_upload="true"/>
    <datatype extension="phar" type="galaxy.datatypes.molecules:PHAR" display_in_upload="false"/>
    <datatype extension="pdb" type="galaxy.datatypes.molecules:PDB" display_in_upload="true">
      <display file="icn3d/icn3d_simple.xml"/>
      <converter file="pdb_to_gro.xml" target_datatype="gro"/>
    </datatype>
    <datatype extension="pdbqt" type="galaxy.datatypes.molecules:PDBQT" display_in_upload="true"/>
    <datatype extension="pqr" type="galaxy.datatypes.molecules:PQR" display_in_upload="true" />
    <datatype extension="trr" type="galaxy.datatypes.binary:Trr" display_in_upload="true">
      <converter file="mdconvert.xml" target_datatype="xtc"/>
      <converter file="mdconvert.xml" target_datatype="dcd"/>
    </datatype>
    <datatype extension="dcd" type="galaxy.datatypes.binary:Dcd" display_in_upload="true">
      <converter file="mdconvert.xml" target_datatype="xtc"/>
      <converter file="mdconvert.xml" target_datatype="trr"/>
    </datatype>
    <datatype extension="top" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="itp" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="mdp" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="ndx" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="xvg" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="xtc" type="galaxy.datatypes.binary:Xtc" display_in_upload="true">
      <converter file="mdconvert.xml" target_datatype="trr"/>
      <converter file="mdconvert.xml" target_datatype="dcd"/>
    </datatype>
    <datatype extension="cpt" type="galaxy.datatypes.binary:Cpt" display_in_upload="true"/>
    <datatype extension="edr" type="galaxy.datatypes.binary:Edr" display_in_upload="true"/>
    <datatype extension="tpr" type="galaxy.datatypes.binary:Binary" display_in_upload="true"/>
    <datatype extension="gro" type="galaxy.datatypes.molecules:GRO" display_in_upload="true">
      <converter file="gro_to_pdb.xml" target_datatype="pdb"/>
    </datatype>
    <datatype extension="vel" type="galaxy.datatypes.binary:Vel" display_in_upload="true"/>
    <datatype extension="grd" type="galaxy.datatypes.molecules:grd" display_in_upload="true"/>
    <datatype extension="grd.tgz" type="galaxy.datatypes.molecules:grdtgz" display_in_upload="true"/>
    <!-- mothur formats -->
    <datatype extension="mothur.otu" type="galaxy.datatypes.mothur:Otu" display_in_upload="true"/>
    <datatype extension="mothur.list" type="galaxy.datatypes.mothur:Otu" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.sabund" type="galaxy.datatypes.mothur:Sabund" display_in_upload="true"/>
    <datatype extension="mothur.rabund" type="galaxy.datatypes.mothur:Sabund" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.shared" type="galaxy.datatypes.mothur:GroupAbund" display_in_upload="true"/>
    <datatype extension="mothur.relabund" type="galaxy.datatypes.mothur:GroupAbund" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.names" type="galaxy.datatypes.mothur:Names" display_in_upload="true"/>
    <datatype extension="mothur.design" type="galaxy.datatypes.mothur:Group" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.summary" type="galaxy.datatypes.mothur:Summary" display_in_upload="true"/>
    <datatype extension="mothur.groups" type="galaxy.datatypes.mothur:Group" display_in_upload="true"/>
    <datatype extension="mothur.oligos" type="galaxy.datatypes.mothur:Oligos" display_in_upload="true"/>
    <datatype extension="mothur.align" type="galaxy.datatypes.sequence:Fasta" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.accnos" type="galaxy.datatypes.mothur:AccNos" display_in_upload="true"/>
    <datatype extension="mothur.otulabels" type="galaxy.datatypes.mothur:AccNos" display_in_upload="true"/>
    <datatype extension="mothur.otu.corr" type="galaxy.datatypes.tabular:Tabular" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.map" type="galaxy.datatypes.mothur:SecondaryStructureMap" display_in_upload="true"/>
    <datatype extension="mothur.align.check" type="galaxy.datatypes.mothur:AlignCheck" display_in_upload="true"/>
    <datatype extension="mothur.align.report" type="galaxy.datatypes.mothur:AlignReport" display_in_upload="true"/>
    <datatype extension="mothur.filter" type="galaxy.datatypes.mothur:LaneMask" display_in_upload="true"/>
    <datatype extension="mothur.dist" type="galaxy.datatypes.mothur:DistanceMatrix" display_in_upload="true"/>
    <datatype extension="mothur.tre" type="galaxy.datatypes.data:Text" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.pair.dist" type="galaxy.datatypes.mothur:PairwiseDistanceMatrix" display_in_upload="true"/>
    <datatype extension="mothur.square.dist" type="galaxy.datatypes.mothur:SquareDistanceMatrix" display_in_upload="true"/>
    <datatype extension="mothur.lower.dist" type="galaxy.datatypes.mothur:LowerTriangleDistanceMatrix" display_in_upload="true"/>
    <datatype extension="mothur.ref.taxonomy" type="galaxy.datatypes.mothur:RefTaxonomy" display_in_upload="true">
      <converter file="ref_to_seq_taxonomy_converter.xml" target_datatype="mothur.seq.taxonomy"/>
    </datatype>
    <datatype extension="mothur.seq.taxonomy" type="galaxy.datatypes.mothur:RefTaxonomy" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.rdp.taxonomy" type="galaxy.datatypes.mothur:RefTaxonomy" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.cons.taxonomy" type="galaxy.datatypes.mothur:ConsensusTaxonomy" display_in_upload="true"/>
    <datatype extension="mothur.tax.summary" type="galaxy.datatypes.mothur:TaxonomySummary" display_in_upload="true"/>
    <datatype extension="mothur.freq" type="galaxy.datatypes.mothur:Frequency" display_in_upload="true"/>
    <datatype extension="mothur.quan" type="galaxy.datatypes.mothur:Quantile" display_in_upload="true"/>
    <datatype extension="mothur.filtered.quan" type="galaxy.datatypes.mothur:Quantile" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.masked.quan" type="galaxy.datatypes.mothur:Quantile" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.filtered.masked.quan" type="galaxy.datatypes.mothur:Quantile" subclass="true" display_in_upload="true"/>
    <datatype extension="mothur.axes" type="galaxy.datatypes.mothur:Axes" display_in_upload="true"/>
    <datatype extension="mothur.sff.flow" type="galaxy.datatypes.mothur:SffFlow" display_in_upload="true"/>
    <datatype extension="mothur.count_table" type="galaxy.datatypes.mothur:CountTable" display_in_upload="true"/>
    <datatype extension="neostore" type="galaxy.datatypes.neo4j:Neo4jDB" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="neostore.zip" type="galaxy.datatypes.neo4j:Neo4jDBzip" display_in_upload="true">
      <converter file="neostorezip_to_neostore_converter.xml" target_datatype="neostore"/>
    </datatype>
    <datatype extension="trackhub" type="galaxy.datatypes.tracks:UCSCTrackHub" display_in_upload="true">
      <display file="ucsc/trackhub.xml"/>
    </datatype>
    <datatype extension="blastxml" type="galaxy.datatypes.blast:BlastXml" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="blastdbn" type="galaxy.datatypes.blast:BlastNucDb" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="blastdbp" type="galaxy.datatypes.blast:BlastProtDb" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="blastdbd" type="galaxy.datatypes.blast:BlastDomainDb" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="lastdb" type="galaxy.datatypes.blast:LastDb" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="blastdbn5" type="galaxy.datatypes.blast:BlastNucDb5" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="blastdbp5" type="galaxy.datatypes.blast:BlastProtDb5" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="blastdbd5" type="galaxy.datatypes.blast:BlastDomainDb5" mimetype="text/html" display_in_upload="false"/>
    <datatype extension="maskinfo-asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" subclass="true" display_in_upload="true"/>
    <datatype extension="maskinfo-asn1-binary" type="galaxy.datatypes.binary:GenericAsn1Binary" mimetype="application/octet-stream" subclass="true" display_in_upload="true"/>
    <datatype extension="pssm-asn1" type="galaxy.datatypes.data:GenericAsn1" mimetype="text/plain" subclass="true" display_in_upload="true"/>
    <!-- PlantTribes datatypes -->
    <!--
    The commented entries in this section are required by versions 1.0.0, 1.0.1 and 1.0.2 of the
    PlantTribes tools in the MTS Phylogenetics category, and are not required by version 1.0.3 of
    later.  These datatypes will be removed in a future Galaxy release.
    -->
    <!--
    <datatype extension="ptalign" type="galaxy.datatypes.plant_tribes:PlantTribesMultipleSequenceAlignment" />
    <datatype extension="ptalignca" type="galaxy.datatypes.plant_tribes:PlantTribesMultipleSequenceAlignmentCodonAlignment" />
    <datatype extension="ptaligntrimmed" type="galaxy.datatypes.plant_tribes:PlantTribesMultipleSequenceAlignmentTrimmed" />
    <datatype extension="ptaligntrimmedca" type="galaxy.datatypes.plant_tribes:PlantTribesMultipleSequenceAlignmentTrimmedCodonAlignment" />
    <datatype extension="ptalignfiltered" type="galaxy.datatypes.plant_tribes:PlantTribesMultipleSequenceAlignmentFiltered" />
    <datatype extension="ptalignfilteredca" type="galaxy.datatypes.plant_tribes:PlantTribesMultipleSequenceAlignmentFilteredCodonAlignment" />
    -->
    <datatype extension="ptkscmp" type="galaxy.datatypes.plant_tribes:PlantTribesKsComponents" display_in_upload="true"/>
    <!--
    <datatype extension="ptortho" type="galaxy.datatypes.plant_tribes:PlantTribesOrtho" />
    <datatype extension="ptorthocs" type="galaxy.datatypes.plant_tribes:PlantTribesOrthoCodingSequence" />
    <datatype extension="ptphylip" type="galaxy.datatypes.plant_tribes:PlantTribesPhylip" />
    <datatype extension="pttgf" type="galaxy.datatypes.plant_tribes:PlantTribesTargetedGeneFamilies" />
    <datatype extension="pttree" type="galaxy.datatypes.plant_tribes:PlantTribesPhylogeneticTree" />
    -->
    <datatype extension="smat" type="galaxy.datatypes.plant_tribes:Smat" display_in_upload="true"/>
    <!-- Start Haplotype / LOD Datatypes -->
    <datatype extension="alohomora_gts" type="galaxy.datatypes.genetics:GenotypeMatrix"/>
    <datatype extension="alohomora_map" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
    <datatype extension="alohomora_maf" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
    <datatype extension="alohomora_ped" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
    <!-- Common input formats: Generated by alohomora, but user may also upload these manually -->
    <datatype extension="linkage_pedin" type="galaxy.datatypes.tabular:Tabular" subclass="true"/>
    <datatype extension="linkage_datain" type="galaxy.datatypes.genetics:DataIn"/>
    <datatype extension="linkage_map" type="galaxy.datatypes.genetics:MarkerMap"/>
    <!-- All output linkage is converted into the Allegro output format -->
    <datatype extension="allegro_ihaplo" type="galaxy.datatypes.tabular:Tabular"/>
    <datatype extension="allegro_descent" type="galaxy.datatypes.tabular:Tabular"/>
    <datatype extension="allegro_fparam" type="galaxy.datatypes.genetics:AllegroLOD"/>
    <!-- IDEAS datatypes -->
    <datatype extension="ideaspre" type="galaxy.datatypes.genetics:IdeasPre" display_in_upload="true"/>
    <!-- End IDEAS datatypes -->
    <datatype extension="sbml" type="galaxy.datatypes.xml:Sbml" mimetype="application/xml" display_in_upload="true"/>
    <datatype extension="spalndbnp" type="galaxy.datatypes.spaln:SpalnNuclDb" display_in_upload="true" />
    <datatype extension="spalndba" type="galaxy.datatypes.spaln:SpalnProtDb" display_in_upload="true" />
    <datatype extension="dada2_dada" type="galaxy.datatypes.binary:RDS" subclass="true" display_in_upload="true" />
    <datatype extension="dada2_errorrates" type="galaxy.datatypes.binary:RDS" subclass="true" display_in_upload="true" />
    <datatype extension="dada2_mergepairs" type="galaxy.datatypes.binary:RDS" subclass="true" display_in_upload="true" />
    <datatype extension="dada2_sequencetable" type="galaxy.datatypes.tabular:Tabular" mimetype="application/text" subclass="true" display_in_upload="true" />
    <datatype extension="dada2_uniques" type="galaxy.datatypes.tabular:Tabular" mimetype="application/text" subclass="true" display_in_upload="true" />
    <datatype extension="ckpt" type="galaxy.datatypes.binary:Binary" subclass="true" display_in_upload="true" />
    <datatype extension="tgz" type="galaxy.datatypes.binary:Binary" subclass="true" mimetype="multipart/x-gzip" display_in_upload="true" />
    <!-- media datatypes -->
    <datatype extension="wav" type="galaxy.datatypes.media:Wav" display_in_upload="true" mimetype="audio/wav"/>
    <datatype extension="mp3" type="galaxy.datatypes.media:Mp3" display_in_upload="true" mimetype="audio/mp3"/>
    <datatype extension="mkv" type="galaxy.datatypes.media:Mkv" display_in_upload="true" mimetype="video/mkv"/>
    <datatype extension="mp4" type="galaxy.datatypes.media:Mp4" display_in_upload="true" mimetype="video/mp4"/>
    <datatype extension="flv" type="galaxy.datatypes.media:Flv" display_in_upload="true" mimetype="video/flv"/>
    <datatype extension="mpg" type="galaxy.datatypes.media:Mpg" display_in_upload="true" mimetype="video/mpeg"/>
    <!-- speech datatypes -->
    <datatype extension="textgrid" type="galaxy.datatypes.speech:TextGrid" display_in_upload="true" mimetype="text/plain"/>
    <datatype extension="par" type="galaxy.datatypes.speech:BPF" display_in_upload="true" mimetype="text/plain-bas"/>
    <datatype extension="ffindex" type="galaxy.datatypes.tabular:Tabular" display_in_upload="true" subclass="true" description_url="https://github.com/soedinglab/ffindex_soedinglab"/>
    <datatype extension="ffdata" type="galaxy.datatypes.data:Data" display_in_upload="true" subclass="true" description_url="https://github.com/soedinglab/ffindex_soedinglab"/>
    <datatype extension="pretext" type="galaxy.datatypes.binary:Pretext" display_in_upload="true" />
    <!-- Structural Materials datatypes -->
    <datatype extension="hexrd.materials.h5" type="galaxy.datatypes.binary:HexrdMaterials" display_in_upload="true"/>
    <datatype extension="npz" type="galaxy.datatypes.binary:Npz" display_in_upload="true"/>
    <datatype extension="hexrd.images.npz" type="galaxy.datatypes.binary:HexrdImagesNpz" display_in_upload="true"/>
    <datatype extension="hexrd.eta_ome.npz" type="galaxy.datatypes.binary:HexrdEtaOmeNpz" display_in_upload="true"/>
    <!-- End Structural Materials datatypes -->
  </registration>
  <sniffers>
    <!--
    The order in which Galaxy attempts to determine data types is
    important because some formats are much more loosely defined
    than others.  The following list should be the most rigidly
    defined format first, followed by next-most rigidly defined,
    and so on.
    -->
    <sniffer type="galaxy.datatypes.plant_tribes:PlantTribesKsComponents"/>
    <sniffer type="galaxy.datatypes.plant_tribes:Smat"/>
    <sniffer type="galaxy.datatypes.mothur:Sabund"/>
    <sniffer type="galaxy.datatypes.mothur:Otu"/>
    <sniffer type="galaxy.datatypes.mothur:GroupAbund"/>
    <sniffer type="galaxy.datatypes.mothur:SecondaryStructureMap"/>
    <sniffer type="galaxy.datatypes.mothur:LowerTriangleDistanceMatrix"/>
    <sniffer type="galaxy.datatypes.mothur:SquareDistanceMatrix"/>
    <sniffer type="galaxy.datatypes.mothur:PairwiseDistanceMatrix"/>
    <sniffer type="galaxy.datatypes.mothur:Oligos"/>
    <sniffer type="galaxy.datatypes.mothur:Quantile"/>
    <sniffer type="galaxy.datatypes.mothur:Frequency"/>
    <sniffer type="galaxy.datatypes.mothur:LaneMask"/>
    <sniffer type="galaxy.datatypes.mothur:RefTaxonomy"/>
    <sniffer type="galaxy.datatypes.mothur:Axes"/>
    <sniffer type="galaxy.datatypes.constructive_solid_geometry:PlyAscii"/>
    <sniffer type="galaxy.datatypes.constructive_solid_geometry:PlyBinary"/>
    <sniffer type="galaxy.datatypes.constructive_solid_geometry:VtkAscii"/>
    <sniffer type="galaxy.datatypes.constructive_solid_geometry:VtkBinary"/>
    <sniffer type="galaxy.datatypes.goldenpath:GoldenPath"/>
    <sniffer type="galaxy.datatypes.interval:ScIdx"/>
    <sniffer type="galaxy.datatypes.tabular:Vcf"/>
    <sniffer type="galaxy.datatypes.binary:JP2"/>
    <sniffer type="galaxy.datatypes.binary:TwoBit"/>
    <sniffer type="galaxy.datatypes.binary:GeminiSQLite"/>
    <sniffer type="galaxy.datatypes.binary:SQmass"/>
    <sniffer type="galaxy.datatypes.binary:MzSQlite"/>
    <sniffer type="galaxy.datatypes.binary:OSW"/>
    <sniffer type="galaxy.datatypes.binary:PQP"/>
    <sniffer type="galaxy.datatypes.binary:IdpDB"/>
    <sniffer type="galaxy.datatypes.binary:ElibSQlite"/>
    <sniffer type="galaxy.datatypes.binary:DlibSQlite"/>
    <sniffer type="galaxy.datatypes.binary:BlibSQlite"/>
    <sniffer type="galaxy.datatypes.binary:ChiraSQLite"/>
    <sniffer type="galaxy.datatypes.binary:CuffDiffSQlite"/>
    <sniffer type="galaxy.datatypes.binary:GAFASQLite"/>
    <sniffer type="galaxy.datatypes.binary:NcbiTaxonomySQlite"/>
    <sniffer type="galaxy.datatypes.binary:SQlite"/>
    <sniffer type="galaxy.datatypes.binary:H5MLM"/>
    <sniffer type="galaxy.datatypes.binary:Cool"/>
    <sniffer type="galaxy.datatypes.binary:MCool"/>
    <sniffer type="galaxy.datatypes.binary:Loom"/>
    <sniffer type="galaxy.datatypes.binary:Anndata"/>
    <sniffer type="galaxy.datatypes.binary:Biom2"/>
    <sniffer type="galaxy.datatypes.binary:HexrdMaterials"/>
    <sniffer type="galaxy.datatypes.binary:H5"/>
    <sniffer type="galaxy.datatypes.binary:HexrdImagesNpz"/>
    <sniffer type="galaxy.datatypes.binary:HexrdEtaOmeNpz"/>
    <sniffer type="galaxy.datatypes.binary:Npz"/>
    <sniffer type="galaxy.datatypes.binary:Bam"/>
    <sniffer type="galaxy.datatypes.binary:BamQuerynameSorted"/>
    <sniffer type="galaxy.datatypes.binary:BamNative"/>
    <sniffer type="galaxy.datatypes.binary:CRAM"/>
    <sniffer type="galaxy.datatypes.binary:Sff"/>
    <sniffer type="galaxy.datatypes.binary:Sra"/>
    <sniffer type="galaxy.datatypes.binary:NetCDF"/>
    <sniffer type="galaxy.datatypes.binary:DAA"/>
    <sniffer type="galaxy.datatypes.binary:RMA6"/>
    <sniffer type="galaxy.datatypes.binary:DMND"/>
    <sniffer type="galaxy.datatypes.binary:Parquet"/>
    <sniffer type="galaxy.datatypes.binary:BafTar"/>
    <sniffer type="galaxy.datatypes.binary:TdfTar"/>
    <sniffer type="galaxy.datatypes.binary:MassHunterTar"/>
    <sniffer type="galaxy.datatypes.binary:MassLynxTar"/>
    <sniffer type="galaxy.datatypes.binary:YepTar"/>
    <sniffer type="galaxy.datatypes.binary:WiffTar"/>
    <sniffer type="galaxy.datatypes.binary:Fast5ArchiveGz"/>
    <sniffer type="galaxy.datatypes.binary:Fast5ArchiveBz2"/>
    <sniffer type="galaxy.datatypes.binary:Fast5Archive"/>
    <sniffer type="galaxy.datatypes.binary:Meryldb" />
    <sniffer type="galaxy.datatypes.binary:Bref3" />
    <sniffer type="galaxy.datatypes.binary:PostgresqlArchive"/>
    <sniffer type="galaxy.datatypes.binary:ICM"/>
    <sniffer type="galaxy.datatypes.binary:Idat"/>
    <sniffer type="galaxy.datatypes.binary:Trr"/>
    <sniffer type="galaxy.datatypes.binary:Dcd"/>
    <sniffer type="galaxy.datatypes.binary:Xtc"/>
    <sniffer type="galaxy.datatypes.binary:Cpt"/>
    <sniffer type="galaxy.datatypes.binary:Edr"/>
    <sniffer type="galaxy.datatypes.binary:Vel"/>
    <sniffer type="galaxy.datatypes.binary:Xlsx"/>
    <sniffer type="galaxy.datatypes.binary:CompressedZipArchive"/>
    <sniffer type="galaxy.datatypes.binary:Pretext"/>
    <sniffer type="galaxy.datatypes.annotation:Augustus"/>
    <sniffer type="galaxy.datatypes.xml:Owl"/>
    <sniffer type="galaxy.datatypes.triples:Rdf"/>
    <sniffer type="galaxy.datatypes.blast:BlastXml"/>
    <sniffer type="galaxy.datatypes.images:Gifti" />
    <sniffer type="galaxy.datatypes.xml:Phyloxml"/>
    <sniffer type="galaxy.datatypes.xml:Dzi"/>
    <sniffer type="galaxy.datatypes.xml:Sbml"/>
    <sniffer type="galaxy.datatypes.proteomics:Dta2d"/>
    <sniffer type="galaxy.datatypes.proteomics:Edta"/>
    <sniffer type="galaxy.datatypes.proteomics:ConsensusXML"/>
    <sniffer type="galaxy.datatypes.proteomics:IdXML"/>
    <sniffer type="galaxy.datatypes.proteomics:FeatureXML"/>
    <sniffer type="galaxy.datatypes.proteomics:MascotXML"/>
    <sniffer type="galaxy.datatypes.proteomics:Mgf"/>
    <sniffer type="galaxy.datatypes.proteomics:Ms2"/>
    <sniffer type="galaxy.datatypes.proteomics:Msp"/>
    <sniffer type="galaxy.datatypes.proteomics:MzData"/>
    <sniffer type="galaxy.datatypes.proteomics:MzIdentML"/>
    <sniffer type="galaxy.datatypes.proteomics:MzML"/>
    <sniffer type="galaxy.datatypes.proteomics:MzQuantML"/>
    <sniffer type="galaxy.datatypes.proteomics:MzTab"/>
    <sniffer type="galaxy.datatypes.proteomics:MzTab2"/>
    <sniffer type="galaxy.datatypes.proteomics:ParamXml"/>
    <sniffer type="galaxy.datatypes.proteomics:MzXML"/>
    <sniffer type="galaxy.datatypes.proteomics:NmrML"/>
    <sniffer type="galaxy.datatypes.proteomics:Kroenik"/>
    <sniffer type="galaxy.datatypes.proteomics:PepList"/>
    <sniffer type="galaxy.datatypes.proteomics:PSMS"/>
    <sniffer type="galaxy.datatypes.proteomics:PepXml"/>
    <sniffer type="galaxy.datatypes.proteomics:ProtXML"/>
    <sniffer type="galaxy.datatypes.proteomics:SPLib"/>
    <sniffer type="galaxy.datatypes.proteomics:TandemXML"/>
    <sniffer type="galaxy.datatypes.proteomics:ThermoRAW"/>
    <sniffer type="galaxy.datatypes.proteomics:TraML"/>
    <sniffer type="galaxy.datatypes.proteomics:TrafoXML"/>
    <sniffer type="galaxy.datatypes.proteomics:UniProtXML"/>
    <sniffer type="galaxy.datatypes.proteomics:XquestXML"/>
    <sniffer type="galaxy.datatypes.proteomics:XquestSpecXML"/>
    <sniffer type="galaxy.datatypes.proteomics:QCML"/>
    <sniffer type="galaxy.datatypes.proteomics:Wiff"/>
    <sniffer type="galaxy.datatypes.proteomics:PEFF"/>
    <sniffer type="galaxy.datatypes.molecules:CML"/>
    <sniffer type="galaxy.datatypes.xml:GenericXml"/>
    <sniffer type="galaxy.datatypes.triples:HDT"/>
    <sniffer type="galaxy.datatypes.triples:Turtle"/>
    <sniffer type="galaxy.datatypes.triples:NTriples"/>
    <sniffer type="galaxy.datatypes.triples:Jsonld"/>
    <sniffer type="galaxy.datatypes.sequence:Maf"/>
    <sniffer type="galaxy.datatypes.sequence:Lav"/>
    <sniffer type="galaxy.datatypes.sequence:MemePsp"/>
    <sniffer type="galaxy.datatypes.sequence:Fastg"/>
    <sniffer type="galaxy.datatypes.sequence:csFasta"/>
    <sniffer type="galaxy.datatypes.qualityscore:QualityScoreSOLiD"/>
    <sniffer type="galaxy.datatypes.qualityscore:QualityScore454"/>
    <sniffer type="galaxy.datatypes.molecules:SDF"/>
    <sniffer type="galaxy.datatypes.molecules:PDB"/>
    <sniffer type="galaxy.datatypes.molecules:MOL2"/>
    <sniffer type="galaxy.datatypes.molecules:InChI"/>
    <sniffer type="galaxy.datatypes.molecules:FPS"/>
    <sniffer type="galaxy.datatypes.molecules:PQR"/>
    <sniffer type="galaxy.datatypes.molecules:GRO"/>
    <!-- TODO: see molecules.py <sniffer type="galaxy.datatypes.molecules:SMILES"/>-->
    <sniffer type="galaxy.datatypes.phylip:Phylip"/>
    <sniffer type="galaxy.datatypes.sequence:Fasta"/>
    <sniffer type="galaxy.datatypes.sequence:FastqCSSanger"/>
    <sniffer type="galaxy.datatypes.sequence:FastqSanger"/>
    <sniffer type="galaxy.datatypes.sequence:Fastq"/>
    <sniffer type="galaxy.datatypes.interval:Wiggle"/>
    <sniffer type="galaxy.datatypes.text:Html"/>
    <sniffer type="galaxy.datatypes.images:Pdf"/>
    <sniffer type="galaxy.datatypes.sequence:Axt"/>
    <sniffer type="galaxy.datatypes.sequence:Genbank"/>
    <sniffer type="galaxy.datatypes.interval:Bed"/>
    <sniffer type="galaxy.datatypes.interval:CustomTrack"/>
    <sniffer type="galaxy.datatypes.interval:Gtf"/>
    <sniffer type="galaxy.datatypes.interval:Gff"/>
    <sniffer type="galaxy.datatypes.interval:Gff3"/>
    <sniffer type="galaxy.datatypes.tabular:Pileup"/>
    <sniffer type="galaxy.datatypes.text:Paf"/>
    <sniffer type="galaxy.datatypes.interval:Interval"/>
    <sniffer type="galaxy.datatypes.tabular:Sam"/>
    <sniffer type="galaxy.datatypes.data:Newick"/>
    <sniffer type="galaxy.datatypes.data:Nexus"/>
    <sniffer type="galaxy.datatypes.text:IQTree"/>
    <sniffer type="galaxy.datatypes.text:Obo"/>
    <sniffer type="galaxy.datatypes.text:Arff"/>
    <sniffer type="galaxy.datatypes.text:Ipynb"/>
    <sniffer type="galaxy.datatypes.text:Biom1"/>
    <sniffer type="galaxy.datatypes.text:ImgtJson"/>
    <sniffer type="galaxy.datatypes.text:GeoJson"/>
    <sniffer type="galaxy.datatypes.text:Json"/>
    <sniffer type="galaxy.datatypes.genetics:GenotypeMatrix"/>
    <sniffer type="galaxy.datatypes.genetics:DataIn"/>
    <sniffer type="galaxy.datatypes.genetics:MarkerMap"/>
    <sniffer type="galaxy.datatypes.genetics:AllegroLOD"/>
    <sniffer type="galaxy.datatypes.sequence:RNADotPlotMatrix"/>
    <sniffer type="galaxy.datatypes.sequence:DotBracket"/>
    <sniffer type="galaxy.datatypes.tabular:CMAP"/>
    <sniffer type="galaxy.datatypes.tabular:ConnectivityTable"/>
    <sniffer type="galaxy.datatypes.tabular:CSV"/>
    <sniffer type="galaxy.datatypes.metacyto:mSummary"/>
    <sniffer type="galaxy.datatypes.metacyto:mStats"/>
    <sniffer type="galaxy.datatypes.tabular:TSV"/>
    <sniffer type="galaxy.datatypes.tabular:MatrixMarket"/>
    <sniffer type="galaxy.datatypes.msa:Hmmer2"/>
    <sniffer type="galaxy.datatypes.msa:Hmmer3"/>
    <sniffer type="galaxy.datatypes.msa:Stockholm_1_0"/>
    <sniffer type="galaxy.datatypes.msa:MauveXmfa"/>
    <sniffer type="galaxy.datatypes.msa:InfernalCM"/>
    <sniffer type="galaxy.datatypes.annotation:SnapHmm"/>
    <sniffer type="galaxy.datatypes.microarrays:Cel"/>
    <sniffer type="galaxy.datatypes.microarrays:Gpr"/>
    <sniffer type="galaxy.datatypes.microarrays:Gal"/>
    <sniffer type="galaxy.datatypes.binary:RData"/>
    <sniffer type="galaxy.datatypes.binary:RDS"/>
    <sniffer type="galaxy.datatypes.images:Mrc2014"/>
    <sniffer type="galaxy.datatypes.images:Jpg"/>
    <sniffer type="galaxy.datatypes.images:Png"/>
    <sniffer type="galaxy.datatypes.images:OMETiff"/>
    <sniffer type="galaxy.datatypes.images:Tiff"/>
    <sniffer type="galaxy.datatypes.images:Bmp"/>
    <sniffer type="galaxy.datatypes.images:Gif"/>
    <sniffer type="galaxy.datatypes.images:Im"/>
    <sniffer type="galaxy.datatypes.images:Pcd"/>
    <sniffer type="galaxy.datatypes.images:Pcx"/>
    <sniffer type="galaxy.datatypes.images:Ppm"/>
    <sniffer type="galaxy.datatypes.images:Psd"/>
    <sniffer type="galaxy.datatypes.images:Xbm"/>
    <sniffer type="galaxy.datatypes.images:Rgb"/>
    <sniffer type="galaxy.datatypes.images:Pbm"/>
    <sniffer type="galaxy.datatypes.images:Pgm"/>
    <sniffer type="galaxy.datatypes.images:Xpm"/>
    <sniffer type="galaxy.datatypes.images:Eps"/>
    <sniffer type="galaxy.datatypes.images:Rast"/>
    <sniffer type="galaxy.datatypes.images:Tck" />
    <sniffer type="galaxy.datatypes.images:Trk" />
    <sniffer type="galaxy.datatypes.images:Nifti1" />
    <sniffer type="galaxy.datatypes.images:Nifti2" />
    <sniffer type="galaxy.datatypes.images:Star" />
    <sniffer type="galaxy.datatypes.media:Wav"/>
    <sniffer type="galaxy.datatypes.media:Mkv"/>
    <sniffer type="galaxy.datatypes.media:Mp3"/>
    <sniffer type="galaxy.datatypes.media:Mp4"/>
    <sniffer type="galaxy.datatypes.media:Flv"/>
    <sniffer type="galaxy.datatypes.media:Mpg"/>
    <sniffer type="galaxy.datatypes.speech:TextGrid" />
    <sniffer type="galaxy.datatypes.speech:BPF" />
    <sniffer type="galaxy.datatypes.text:Yaml" />
    <!--
    Keep this commented until the sniff method in the assembly.py
    module is fixed to not read the entire file.
    <sniffer type="galaxy.datatypes.assembly:Amos"/>
    -->
    <sniffer type="galaxy.datatypes.binary:OxliCountGraph"/>
    <sniffer type="galaxy.datatypes.binary:OxliNodeGraph"/>
    <sniffer type="galaxy.datatypes.binary:OxliTagSet"/>
    <sniffer type="galaxy.datatypes.binary:OxliStopTags"/>
    <sniffer type="galaxy.datatypes.binary:OxliSubset"/>
    <sniffer type="galaxy.datatypes.binary:OxliGraphLabels"/>
    <sniffer type="galaxy.datatypes.neo4j:Neo4jDBzip"/>
  </sniffers>
</datatypes>