diff --git a/lib/galaxy/tools/xsd/Makefile b/lib/galaxy/tools/xsd/Makefile deleted file mode 100644 index f1d2326b5efa..000000000000 --- a/lib/galaxy/tools/xsd/Makefile +++ /dev/null @@ -1,15 +0,0 @@ -SHELL=/bin/bash -.PHONY: all clean tests - -all: tests - -tests: galaxy.xsd galaxy.jxb generated/ObjectFactory.java - sed "s%^%https://bitbucket.org/galaxy/galaxy-central/raw/c3eefbdaaa1ab242a1c81b65482ef2fbe943a390/%" test.urls |\ - while read L; do echo "#$${L}" && curl -ksL "$${L}" | xmllint --noout --schema $< - ; done - - -generated/ObjectFactory.java : galaxy.jxb galaxy.xsd - $(if $(realpath ${JAVA_HOME}/bin/xjc),xjc -b $^) - -clean: - rm -rf generated diff --git a/lib/galaxy/tools/xsd/test.urls b/lib/galaxy/tools/xsd/test.urls deleted file mode 100644 index a7b967442300..000000000000 --- a/lib/galaxy/tools/xsd/test.urls +++ /dev/null @@ -1,142 +0,0 @@ -test/functional/tools/bibtex.xml -test/functional/tools/catDocker.xml -test/functional/tools/simple_constructs.xml -test/functional/tools/collection_paired_test.xml -tools/sr_assembly/velvetg.xml -tools/sr_assembly/velveth.xml -tools/data_source/microbial_import.xml -tools/data_source/wormbase_test.xml -tools/data_source/ucsc_archaea.xml -tools/data_source/worm_modencode.xml -tools/data_source/bed_convert.xml -tools/data_source/gramene_mart.xml -tools/data_source/ebi_sra.xml -tools/data_source/modmine.xml -tools/data_source/import.xml -tools/data_source/echo.xml -tools/data_source/biomart.xml -tools/data_source/ucsc_tablebrowser_test.xml -tools/data_source/flymine_test.xml -tools/data_source/ucsc_proxy.xml -tools/data_source/biomart_test.xml -tools/data_source/access_libraries.xml -tools/data_source/ucsc_tablebrowser.xml -tools/data_source/hbvar.xml -tools/data_source/wormbase.xml -tools/data_source/flymine.xml -tools/data_source/ucsc_tablebrowser_archaea.xml -tools/data_source/metabolicmine.xml -tools/data_source/eupathdb.xml -tools/data_source/yeastmine.xml -tools/data_source/fly_modencode.xml -tools/data_source/upload.xml -tools/data_source/mousemine.xml -tools/data_source/cbi_rice_mart.xml -tools/data_source/hapmapmart.xml -tools/data_source/ucsc_testproxy.xml -tools/data_source/ratmine.xml -tools/data_source/genbank.xml -tools/visualization/LAJ.xml -tools/stats/aggregate_binned_scores_in_intervals.xml -tools/stats/filtering.xml -tools/stats/grouping.xml -tools/stats/gsummary.xml -tools/ngs_simulation/ngs_simulation.xml -tools/maf/maf_by_block_number.xml -tools/maf/maf_to_interval.xml -tools/maf/maf_to_bed.xml -tools/maf/maf_limit_size.xml -tools/maf/vcf_to_maf_customtrack.xml -tools/maf/maf_limit_to_species.xml -tools/maf/maf_filter.xml -tools/maf/maf_split_by_species.xml -tools/maf/maf_to_fasta.xml -tools/maf/genebed_maf_to_fasta.xml -tools/maf/interval2maf_pairwise.xml -tools/maf/interval2maf.xml -tools/maf/maf_stats.xml -tools/maf/maf_thread_for_species.xml -tools/maf/macros.xml -tools/maf/interval_maf_to_merged_fasta.xml -tools/maf/maf_reverse_complement.xml -tools/metag_tools/shrimp_wrapper.xml -tools/metag_tools/blat_wrapper.xml -tools/metag_tools/shrimp_color_wrapper.xml -tools/genomespace/genomespace_exporter.xml -tools/genomespace/genomespace_file_browser_dev.xml -tools/genomespace/genomespace_importer.xml -tools/genomespace/genomespace_file_browser_prod.xml -tools/genomespace/genomespace_file_browser_test.xml -tools/plotting/bar_chart.xml -tools/plotting/boxplot.xml -tools/solid_tools/maq_cs_wrapper.xml -tools/solid_tools/solid_qual_stats.xml -tools/solid_tools/solid_qual_boxplot.xml -tools/sr_mapping/srma_wrapper.xml -tools/sr_mapping/PerM.xml -tools/sr_mapping/bfast_wrapper.xml -tools/sr_mapping/fastq_statistics.xml -tools/sr_mapping/mosaik.xml -tools/extract/extract_genomic_dna.xml -tools/extract/liftOver_wrapper.xml -tools/validation/fix_errors.xml -tools/meme/meme.xml -tools/meme/fimo.xml -tools/next_gen_conversion/solid_to_fastq.xml -tools/next_gen_conversion/fastq_conversions.xml -tools/next_gen_conversion/solid2fastq.xml -tools/next_gen_conversion/fastq_gen_conv.xml -tools/evolution/add_scores.xml -tools/evolution/codingSnps.xml -tools/phenotype_association/master2pg.xml -tools/phenotype_association/pass.xml -tools/phenotype_association/lps.xml -tools/phenotype_association/ldtools.xml -tools/phenotype_association/master2gd_snp.xml -tools/phenotype_association/sift.xml -tools/phenotype_association/linkToDavid.xml -tools/phenotype_association/beam.xml -tools/phenotype_association/linkToGProfile.xml -tools/phenotype_association/gpass.xml -tools/filters/CreateInterval.xml -tools/filters/convert_characters.xml -tools/filters/bed2gff.xml -tools/filters/mergeCols.xml -tools/filters/sorter.xml -tools/filters/trimmer.xml -tools/filters/uniq.xml -tools/filters/wig_to_bigwig.xml -tools/filters/ucsc_gene_bed_to_exon_bed.xml -tools/filters/gff2bed.xml -tools/filters/fileGrep.xml -tools/filters/randomlines.xml -tools/filters/axt_to_fasta.xml -tools/filters/cutWrapper.xml -tools/filters/gtf2bedgraph.xml -tools/filters/axt_to_lav.xml -tools/filters/ucsc_gene_table_to_intervals.xml -tools/filters/pasteWrapper.xml -tools/filters/gff/extract_GFF_Features.xml -tools/filters/gff/gtf_filter_by_attribute_values_list.xml -tools/filters/gff/gff_filter_by_feature_count.xml -tools/filters/gff/gff_filter_by_attribute.xml -tools/filters/grep.xml -tools/filters/fixedValueColumn.xml -tools/filters/catWrapper.xml -tools/filters/condense_characters.xml -tools/filters/headWrapper.xml -tools/filters/wc_gnu.xml -tools/filters/axt_to_concat_fasta.xml -tools/filters/commWrapper.xml -tools/filters/tailWrapper.xml -tools/filters/bed_to_bigbed.xml -tools/filters/lav_to_bed.xml -tools/filters/joiner.xml -tools/filters/changeCase.xml -tools/filters/compare.xml -tools/filters/wiggle_to_simple.xml -tools/filters/secure_hash_message_digest.xml -tools/filters/sff_extractor.xml -tools/filters/remove_beginning.xml -tools/filters/ucsc_gene_bed_to_intron_bed.xml -tools/filters/joiner2.xml