From 7d2cd2272299b94b01c8d22c0c1f7f5cbfb2b91a Mon Sep 17 00:00:00 2001 From: Martin Cech Date: Thu, 14 Sep 2017 19:49:58 -0400 Subject: [PATCH] replace colon and comma in role names since they are also separators --- client/galaxy/scripts/mvc/library/library-dataset-view.js | 3 ++- static/maps/mvc/library/library-dataset-view.js.map | 6 +++++- static/scripts/mvc/library/library-dataset-view.js | 4 ++++ 3 files changed, 11 insertions(+), 2 deletions(-) diff --git a/client/galaxy/scripts/mvc/library/library-dataset-view.js b/client/galaxy/scripts/mvc/library/library-dataset-view.js index ee518250323f..6a78a9be25e8 100644 --- a/client/galaxy/scripts/mvc/library/library-dataset-view.js +++ b/client/galaxy/scripts/mvc/library/library-dataset-view.js @@ -275,7 +275,8 @@ var LibraryDatasetView = Backbone.View.extend({ _serializeRoles : function(role_list){ var selected_roles = []; for (var i = 0; i < role_list.length; i++) { - selected_roles.push(role_list[i][1] + ':' + role_list[i][0]); + // Replace the : and , in role's name since these are select2 separators for initialData + selected_roles.push(role_list[i][1] + ':' + role_list[i][0].replace(':', ' ').replace(',', ' &')); } return selected_roles; }, diff --git a/static/maps/mvc/library/library-dataset-view.js.map b/static/maps/mvc/library/library-dataset-view.js.map index c52fb56e73f3..c531a2202f16 100644 --- a/static/maps/mvc/library/library-dataset-view.js.map +++ b/static/maps/mvc/library/library-dataset-view.js.map @@ -1 +1,5 @@ -{"version":3,"file":"library-dataset-view.js","sources":["../../../src/mvc/library/library-dataset-view.js"],"names":["define","mod_toastr","mod_library_model","mod_utils","mod_select","LibraryDatasetView","Backbone","View","extend","el","model","options","defaults","edit_mode","events","click .toolbtn_modify_dataset","click .toolbtn_cancel_modifications","click .toolbtn-download-dataset","click .toolbtn-import-dataset","click .copy-link-to-clipboard","click .make-private","click 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+>>>>>>> replace colon and comma in role names since they are also separators diff --git a/static/scripts/mvc/library/library-dataset-view.js b/static/scripts/mvc/library/library-dataset-view.js index 33f6928f4311..1d430b9070e3 100644 --- a/static/scripts/mvc/library/library-dataset-view.js +++ b/static/scripts/mvc/library/library-dataset-view.js @@ -1,2 +1,6 @@ +<<<<<<< HEAD define(["libs/toastr","mvc/library/library-model","utils/utils","mvc/ui/ui-select"],function(a,b,c,d){var e=Backbone.View.extend({el:"#center",model:null,options:{},defaults:{edit_mode:!1},events:{"click .toolbtn_modify_dataset":"enableModification","click .toolbtn_cancel_modifications":"render","click .toolbtn-download-dataset":"downloadDataset","click .toolbtn-import-dataset":"importIntoHistory","click .copy-link-to-clipboard":"copyToClipboard","click .make-private":"makeDatasetPrivate","click .remove-restrictions":"removeDatasetRestrictions","click .toolbtn_save_permissions":"savePermissions","click .toolbtn_save_modifications":"saveModifications"},select_genome:null,select_extension:null,list_extensions:[],auto:{id:"auto",text:"Auto-detect",description:"This system will try to detect the file type automatically. If your file is not detected properly as one of the known formats, it most likely means that it has some format problems (e.g., different number of columns on different rows). You can still coerce the system to set your data to the format you think it should be. You can also upload compressed files, which will automatically be decompressed."},list_genomes:[],initialize:function(a){this.options=_.extend(this.options,a),this.fetchExtAndGenomes(),this.options.id&&this.fetchDataset()},fetchDataset:function(c){this.options=_.extend(this.options,c),this.model=new b.Item({id:this.options.id});var d=this;this.model.fetch({success:function(){d.options.show_permissions?d.showPermissions():d.options.show_version?d.fetchVersion():d.render()},error:function(b,c){"undefined"!=typeof c.responseJSON?a.error(c.responseJSON.err_msg+" Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}}):a.error("An error occurred. Click this to go back.","",{onclick:function(){Galaxy.libraries.library_router.back()}})}})},render:function(a){this.options=_.extend(this.options,a),$(".tooltip").remove();var b=this.templateDataset();this.$el.html(b({item:this.model})),$(".peek").html(this.model.get("peek")),$("#center [data-toggle]").tooltip()},fetchVersion:function(c){this.options=_.extend(this.options,c),that=this,this.options.ldda_id?(this.ldda=new b.Ldda({id:this.options.ldda_id}),this.ldda.url=this.ldda.urlRoot+this.model.id+"/versions/"+this.ldda.id,this.ldda.fetch({success:function(){that.renderVersion()},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?c.responseJSON.err_msg:"An error occurred.")}})):(this.render(),a.error("Library dataset version requested but no id provided."))},renderVersion:function(){$(".tooltip").remove();var a=this.templateVersion();this.$el.html(a({item:this.model,ldda:this.ldda})),$(".peek").html(this.ldda.get("peek"))},enableModification:function(){$(".tooltip").remove();var a=this.templateModifyDataset();this.$el.html(a({item:this.model})),this.renderSelectBoxes({genome_build:this.model.get("genome_build"),file_ext:this.model.get("file_ext")}),$(".peek").html(this.model.get("peek")),$("#center [data-toggle]").tooltip()},downloadDataset:function(){var a=Galaxy.root+"api/libraries/datasets/download/uncompressed",b={ld_ids:this.id};this.processDownload(a,b)},processDownload:function(b,c,d){if(b&&c){c="string"==typeof c?c:$.param(c);var e="";$.each(c.split("&"),function(){var a=this.split("=");e+=''}),$('
'+e+"
").appendTo("body").submit().remove(),a.info("Your download will begin soon.")}},importIntoHistory:function(){this.refreshUserHistoriesList(function(a){var b=a.templateBulkImportInModal();a.modal=Galaxy.modal,a.modal.show({closing_events:!0,title:"Import into History",body:b({histories:a.histories.models}),buttons:{Import:function(){a.importCurrentIntoHistory()},Close:function(){Galaxy.modal.hide()}}})})},refreshUserHistoriesList:function(c){var d=this;this.histories=new b.GalaxyHistories,this.histories.fetch({success:function(b){0===b.length?a.warning("You have to create history first. Click this to do so.","",{onclick:function(){window.location=Galaxy.root}}):c(d)},error:function(b,c){a.error("undefined"!=typeof c.responseJSON?c.responseJSON.err_msg:"An error occurred.")}})},importCurrentIntoHistory:function(){this.modal.disableButton("Import");var b=this.modal.$("input[name=history_name]").val(),c=this;if(""!==b)$.post(Galaxy.root+"api/histories",{name:b}).done(function(a){c.processImportToHistory(a.id)}).fail(function(){a.error("An error occurred.")}).always(function(){c.modal.enableButton("Import")});else{var d=$(this.modal.$el).find("select[name=dataset_import_single] option:selected").val();this.processImportToHistory(d),this.modal.enableButton("Import")}},processImportToHistory:function(c){var d=new b.HistoryItem;d.url=d.urlRoot+c+"/contents",jQuery.getJSON(Galaxy.root+"history/set_as_current?id="+c),d.save({content:this.id,source:"library"},{success:function(){Galaxy.modal.hide(),a.success("Dataset imported. 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    ','
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','
',"<% if (is_admin) { %>","You are logged in as an administrator therefore you can manage any dataset on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% } %>","
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',"

Library-related permissions

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Roles that can modify the library item

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','
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","

Dataset-related permissions

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You can remove all access restrictions on this dataset.

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Roles that can access the dataset

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Roles that can manage permissions on the dataset

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',"Select history: ",'","
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'+e+"
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Data Lines<%= _.escape(item.get("metadata_data_lines")) %>
Comment Lines<%= _.escape(item.get("metadata_comment_lines")) %>
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',"
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","

Expired versions:

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",""].join(""))},templateVersion:function(){return _.template(['
','",'
    ','
  1. Libraries
    2. ','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'
  2. <%- path_item[1] %>
    3. ',"<% } else { %>",'
  3. <%- path_item[1] %>
    4. ',"<% } %>","<% }); %>","
",'
This is an expired version of the library dataset: <%= _.escape(item.get("name")) %>
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Name<%= _.escape(ldda.get("name")) %>
Data type<%= _.escape(ldda.get("file_ext")) %>
Genome build<%= _.escape(ldda.get("genome_build")) %>
Size<%= _.escape(ldda.get("file_size")) %>
Date uploaded (UTC)<%= _.escape(ldda.get("date_uploaded")) %>
Uploaded by<%= _.escape(ldda.get("uploaded_by")) %>
Data Lines<%= _.escape(ldda.get("metadata_data_lines")) %>
Comment Lines<%= _.escape(ldda.get("metadata_comment_lines")) %>
Number of Columns<%= _.escape(ldda.get("metadata_columns")) %>
Column Types<%= _.escape(ldda.get("metadata_column_types")) %>
Message<%= _.escape(ldda.get("message")) %>
Miscellaneous blurb<%= _.escape(ldda.get("misc_blurb")) %>
Miscellaneous information<%= _.escape(ldda.get("misc_info")) %>
Tags<%= _.escape(item.get("tags")) %>
","
",'
',"
","
","
","
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','
','",'","
",'
    ','
  1. Libraries
    2. ','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'
  2. <%- path_item[1] %>
    3. ',"<% } else { %>",'
  3. <%- path_item[1] %>
    4. ',"<% } %>","<% }); %>","
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','',"",'','',"","",'',"","","",'',"","","",'','',"","",'','',"","",'','',"",'','','',"",'','<% if (item.get("metadata_comment_lines") === "") { %>','',"<% } else { %>",'',"<% } %>","","",'','',"","",'','',"","",'','',"","",'','',"","",'','',"",'<% if (item.get("tags")) { %>',"",'','',"","<% } %>","
">Name">
Data type",'',"
Genome build",'',"
Size<%= _.escape(item.get("file_size")) %>
Date uploaded (UTC)<%= _.escape(item.get("date_uploaded")) %>
Uploaded by<%= _.escape(item.get("uploaded_by")) %>
Data Lines<%= _.escape(item.get("metadata_data_lines")) %>
Comment Lines<%= _.escape(item.get("metadata_comment_lines")) %>unknown
Number of Columns<%= _.escape(item.get("metadata_columns")) %>
Column Types<%= _.escape(item.get("metadata_column_types")) %>
Message<%= _.escape(item.get("message")) %>
Misc. blurb<%= _.escape(item.get("misc_blurb")) %>
Misc. information">
Tags<%= _.escape(item.get("tags")) %>
","
",'
',"
","
","
","
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','",'
    ','
  1. Libraries
    2. ','<% _.each(item.get("full_path"), function(path_item) { %>',"<% if (path_item[0] != item.id) { %>",'
  2. <%- path_item[1] %>
    3. ',"<% } else { %>",'
  3. <%- path_item[1] %>
    4. ',"<% } %>","<% }); %>","
",'

Dataset: <%= _.escape(item.get("name")) %>

','
',"<% if (is_admin) { %>","You are logged in as an administrator therefore you can manage any dataset on this Galaxy instance. Please make sure you understand the consequences.","<% } else { %>","You can assign any number of roles to any of the following permission types. However please read carefully the implications of such actions.","<% } %>","
",'
',"

Library-related permissions

","

Roles that can modify the library item

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','
User with any of these roles can modify name, metadata, and other information about this library item.
',"
","

Dataset-related permissions

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Changes made below will affect every library item that was created from this dataset and also every history this dataset is part of.
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You can remove all access restrictions on this dataset.

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You can make this dataset private to you.

',"<% } %>","

Roles that can access the dataset

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','
',"User has to have all these roles in order to access this dataset."," Users without access permission cannot have other permissions on this dataset."," If there are no access roles set on the dataset it is considered unrestricted.","
","

Roles that can manage permissions on the dataset

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','
',"User with any of these roles can manage permissions of this dataset. If you remove yourself you will loose the ability manage this dataset unless you are an admin.","
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",'
',"Select history: ",'","
",'
',"or create new: ",'',"","
","
"].join(""))}});return{LibraryDatasetView:e}}); +>>>>>>> replace colon and comma in role names since they are also separators //# sourceMappingURL=../../../maps/mvc/library/library-dataset-view.js.map \ No newline at end of file