[21.01] Fix mulled singularity building #11979
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This used to fail with ``` [May 13 12:53:06] DEBU Container [8a432293fb2f step-adb59c6b2d] started, waiting for completion [May 13 12:53:06] SERR mkdir: missing operand [May 13 12:53:06] SERR Try 'mkdir --help' for more information. [May 13 12:53:06] ERRO Task processing failed: Unexpected exit code [1] of container [8a432293fb2f step-adb59c6b2d], container preserved ``` Involucro interpretes comma-separated arguments in `.run` as individual commands. You can see the full error in https://github.com/BioContainers/multi-package-containers/pull/1713/checks?check_run_id=2575472382 Broke in 71a70ea
bgruening
approved these changes
May 14, 2021
|
Cool, thanks for the fix! |
nsoranzo
reviewed
May 14, 2021
nsoranzo
reviewed
May 14, 2021
nsoranzo
approved these changes
May 14, 2021
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What did you do?
Why did you make this change?
This used to fail with
When using the
sh -centrypoint we need to concatenate arguments in.runas individualcommands. You can see the full error in https://github.com/BioContainers/multi-package-containers/pull/1713/checks?check_run_id=2575472382
Broke in mvdbeek@71a70ea
How to test the changes?
(select the most appropriate option; if the latter, provide steps for testing below)
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