diff --git a/.ci/py3_sources.txt b/.ci/py3_sources.txt
index 755463571214..69f7f69dc084 100644
--- a/.ci/py3_sources.txt
+++ b/.ci/py3_sources.txt
@@ -1,5 +1,6 @@
 lib/galaxy/util/
 lib/galaxy/jobs/runners/util/
+lib/galaxy/tools/cwl/
 lib/galaxy/tools/parser/
 lib/galaxy/tools/lint.py
 lib/galaxy/tools/lint_util.py
diff --git a/lib/galaxy/tools/cwl/parser.py b/lib/galaxy/tools/cwl/parser.py
index 75d3171bb771..3ebf32f5df17 100644
--- a/lib/galaxy/tools/cwl/parser.py
+++ b/lib/galaxy/tools/cwl/parser.py
@@ -341,7 +341,6 @@ def step_proxies(self):
     def runnables(self):
         runnables = []
         for step in self._workflow.steps:
-            print dir(step)
             if "run" in step.tool:
                 runnables.append(step.tool["run"])
         return runnables
diff --git a/lib/galaxy/tools/cwl/runtime_actions.py b/lib/galaxy/tools/cwl/runtime_actions.py
index dc48549301d8..7b596b4ca1b7 100644
--- a/lib/galaxy/tools/cwl/runtime_actions.py
+++ b/lib/galaxy/tools/cwl/runtime_actions.py
@@ -44,7 +44,6 @@ def handle_outputs(job_directory=None):
                     secondary_file_path,
                     extra_target,
                 )
-                print extra_target
         else:
             with open(target_path, "w") as f:
                 f.write(json.dumps(output))