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Fix usage of super() in the mothur datatypes. #2457

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merged 1 commit into from Jun 5, 2016

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@bgruening
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commented Jun 5, 2016

This should fix the few falling test from the mothur wrappers:

Traceback (most recent call last):
  File "/home/bag/projects/code/galaxy/lib/galaxy/tools/parameters/output_collect.py", line 63, in collect_dynamic_collections
    output_collection_def,
  File "/home/bag/projects/code/galaxy/lib/galaxy/tools/parameters/output_collect.py", line 131, in populate_collection_elements
    metadata_source_name=output_collection_def.metadata_source,
  File "/home/bag/projects/code/galaxy/lib/galaxy/tools/parameters/output_collect.py", line 206, in create_dataset
    primary_data.init_meta()
  File "/home/bag/projects/code/galaxy/lib/galaxy/model/__init__.py", line 1979, in init_meta
    return self.datatype.init_meta( self, copy_from=copy_from )
  File "/home/bag/projects/code/galaxy/lib/galaxy/datatypes/mothur.py", line 302, in init_meta
    super(DistanceMatrix, self).init_meta(self, dataset, copy_from=copy_from)
TypeError: init_meta() got multiple values for keyword argument 'copy_from'

@galaxybot galaxybot added this to the 16.07 milestone Jun 5, 2016

@bgruening bgruening referenced this pull request Jun 5, 2016

Merged

Add mothur wrappers #429

@shiltemann

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commented Jun 5, 2016

whoops :/ thanks Björn!

@martenson

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commented Jun 5, 2016

thank you @bgruening

@martenson martenson merged commit 7b3e536 into galaxyproject:dev Jun 5, 2016

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