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Update gsummary.xml #2590

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merged 3 commits into from Jul 15, 2016
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16 changes: 10 additions & 6 deletions tools/stats/gsummary.xml
@@ -1,9 +1,17 @@
<tool id="Summary_Statistics1" name="Summary Statistics" version="1.1.0">
<tool id="Summary_Statistics1" name="Summary Statistics" version="1.1.1">
<description>for any numerical column</description>
<edam_topics>
<edam_topic>topic_2269</edam_topic>
</edam_topics>
<command interpreter="python">gsummary.py $input $out_file1 "$cond"</command>
<requirements>
<requirement type="package" version="2.15.1">R</requirement>
<requirement type="package">rpy</requirement>
<requirement type="package" version="2.7.8">rpy2</requirement>
</requirements>
<stdio>
<exit_code range="1" level="fatal" />
</stdio>
<command>ptyhon $__tool_directory__/gsummary.py $input $out_file1 "$cond"</command>
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input and out_file1 should be quoted as well

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I never do that but OK!

<inputs>
<param format="tabular" name="input" type="data" label="Summary statistics on" help="Dataset missing? See TIP below"/>
<param name="cond" size="30" type="text" value="c5" label="Column or expression" help="See syntax below">
Expand All @@ -13,10 +21,6 @@
<outputs>
<data format="tabular" name="out_file1" />
</outputs>
<requirements>
<requirement type="package" version="2.15.1">R</requirement>
<requirement type="package">rpy</requirement>
</requirements>
<tests>
<test>
<param name="input" value="1.bed"/>
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