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GFF3 support in filter by attribute #3076
The separator issue noted by @nsoranzo makes a robust parser doing both GFF and GTF (update: I should have said legacy GFF, but that kind of includes GTF) at the same time impossible (as written my change would break on some examples). This would need to detect the file format from the headers and/or the Galaxy datatype, and process the final column accordingly. That's all fine in theory but the
I have rebased this old work of mine to resolve the merge conflict (and update the test results), which is arguably still an improvement. I wonder if rather than attempting to handle multiple versions of GFF the tool's input could be restricted to only old (non GFF3) legacy GFF style files?
However, I agree this tool needs a full rewrite to avoid using