Join GitHub today
GitHub is home to over 36 million developers working together to host and review code, manage projects, and build software together.Sign up
Prefer versioned Conda dependencies to unversioned Galaxy ones #3708
We have been trying to get the updated dunovo tools working on Main and ran into both an install time and run time problem of the bowtie2 dependency, which was specified as 2.2.5, resolving via Galaxy packages as 2.1.0. This is due to us having a
I can't imagine any situation in which you'd want an unversioned dependency over a versioned one, even in the explicit "I am making a decision as an admin to override the conda version" case - just use the versioned Galaxy dep in that case. If you really do want unversioned Galaxy deps to override versioned Conda deps then set up a dependency resolvers conf accordingly.