Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Improved Mulled Containers #4173

Merged
merged 3 commits into from Jun 12, 2017

Conversation

Projects
None yet
3 participants
@jmchilton
Copy link
Member

commented Jun 8, 2017

This pull request aggregates the following galaxy-lib mulled changes:

as well as adding in a new mulled container testing tool for versionless requirements (these are a bit more tricky with the v2 hashing scheme).

jmchilton added some commits Jun 8, 2017

Bring in all recent mulled container changes from galaxy-lib.
- Update mulled container resolution to use a version 2 (v2) hashing function. galaxyproject/galaxy-lib#63
- When building images with mulled, always cleanup build directory. https://github.com/galaxyproject/galaxy-lib/pull/55/files and galaxyproject/galaxy-lib#61
- Expose an offline search option in library Conda search utility. galaxyproject/galaxy-lib#60
- Fix first use of mulled-build-* for auto-install of Involucro. galaxyproject/galaxy-lib@c5e7778
- Fix up and improve logic related to rebuilding mulled containers. galaxyproject/galaxy-lib@faf5289
- Fix mulled-build-files to properly handle tab separated files. galaxyproject/galaxy-lib@10b1cf3
- Various other mulled-build-file enhancements. galaxyproject/galaxy-lib@70314e3 galaxyproject/galaxy-lib@21b4bc5 galaxyproject/galaxy-lib@74abe8a galaxyproject/galaxy-lib#58
- Correct mulled-search default namespace from mulled to biocontainers. galaxyproject/galaxy-lib#57
- Add ability to specify a new base image when building mulled images. galaxyproject/galaxy-lib#56
- Update the default mulled target namespace from the older mulled to the new biocontainers.
@bgruening

This comment has been minimized.

Copy link
Member

commented Jun 8, 2017

Thanks John!

Merged downstream galaxy-lib mulled enhancement and fixes.
- Singularity support for building mulled containers galaxyproject/galaxy-lib#64
- Hack to fix previous mulled v2 changes for single requirement tools galaxyproject/galaxy-lib#65.
@jmchilton

This comment has been minimized.

Copy link
Member Author

commented Jun 10, 2017

Update this to include another mulled enhancement and fix:

@dannon dannon merged commit 2178cff into galaxyproject:dev Jun 12, 2017

5 checks passed

api test Build finished. 279 tests run, 0 skipped, 0 failed.
Details
continuous-integration/travis-ci/pr The Travis CI build passed
Details
framework test Build finished. 150 tests run, 0 skipped, 0 failed.
Details
integration test Build finished. 34 tests run, 0 skipped, 0 failed.
Details
toolshed test Build finished. 579 tests run, 0 skipped, 0 failed.
Details
@bgruening

This comment has been minimized.

Copy link
Member

commented Jun 12, 2017

Thanks for the merge Dannon!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
You can’t perform that action at this time.