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Install numpy before bx-python in case you are installing from sdists #4982
bx-python does not explicitly require numpy because it's only used to enable extra features, however, Galaxy depends on those extra features. This isn't usually a big deal because the bx-python wheel is built with numpy, but if you were to build the dependencies from source (explicitly with
File "/home/nate/work/galaxy/lib/galaxy/visualization/data_providers/genome.py", line 14, in <module> from bx.bbi.bigbed_file import BigBedFile ImportError: No module named bigbed_file
Installing numpy before bx-python fixes this.