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Fix sniffing of readname sorted BAM files #6950

merged 2 commits into from Oct 31, 2018


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commented Oct 31, 2018

I'll backport the first commit after the merge, just want to exercise the new testing framework first.

The second commit contains test files I forgot to git add in #6869.

mvdbeek added some commits Oct 31, 2018

Fix sniffing of readname sorted BAM files
This fixes #6949.
The problem is that `super` would fall back to the BamInputSorted
sniffer, which prevents sniffing. Includes a test file for the new
datatype upload testing framework.

@galaxybot galaxybot added this to the 19.01 milestone Oct 31, 2018

@jmchilton jmchilton merged commit f40bb68 into galaxyproject:dev Oct 31, 2018

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