Insights: galaxyproject/galaxy

25 Pull requests merged by 14 people

• Add create_foreign_key migration utility

  #16077 merged May 12, 2023

• [23.0] merge 22.05

  #16073 merged May 11, 2023

• Updated doc and tests for attribute value filter

  #15929 merged May 11, 2023

• Remove legacy form fields from parameter factory

  #15983 merged May 11, 2023

• unify workflows grid components

  #16045 merged May 11, 2023

• Fix font-awesome library types

  #16068 merged May 11, 2023

• [23.0] Display DCE in job parameter component, allow rerunning with DCE input

  #15744 merged May 11, 2023

• Ensure that unselected checkbox inputs emit null instead of an empty array

  #16059 merged May 11, 2023

• External Login Flow: Redirect users if account already exists

  #15019 merged May 10, 2023

• Drop `UserHistories` provider

  #15993 merged May 10, 2023

• Use Filtering class to get and set filter texts

  #15996 merged May 10, 2023

• [23.0] Anonymous User tool link bug fix

  #16065 merged May 10, 2023

• Use jsdom-worker instead of mock

  #16064 merged May 9, 2023

• [22.05] fix linter for assertions (which need to allow for byte suffixes)

  #15873 merged May 9, 2023

• Deprecate tools/evolution

  #15656 merged May 9, 2023

• Migrate job metrics store and component to use pinia and composition api

  #16056 merged May 9, 2023

• Rename object stores in config.

  #16029 merged May 8, 2023

• Change release note icon

  #16049 merged May 8, 2023

• Show backend search errors in hist panel

  #15874 merged May 8, 2023

• [23.0] Backport fix pop-up link

  #16060 merged May 8, 2023

• [23.0] Fix minor error in `WorkflowList` help modal

  #16057 merged May 8, 2023

• Update Python dependencies

  #15942 merged May 8, 2023

• Vendorise ``packaging.versions.LegacyVersion``

  #16058 merged May 8, 2023

• [23.0] Update pulsar to 0.15.2

  #16050 merged May 6, 2023

• [23.0] Various fixes to path prefix handling

  #16033 merged May 5, 2023

9 Pull requests opened by 7 people

• [23.0] Don't build Docker image when pushing to release branches

  #16055 opened May 5, 2023

• Add Repository owner and name fields to ToolSearch

  #16061 opened May 9, 2023

• [23.0] Fix build on macOS 12

  #16066 opened May 9, 2023

• Dataset chunking tests (and small fixes)

  #16069 opened May 10, 2023

• Add count support for listing filters

  #16075 opened May 11, 2023

• Add script for creating (point) releases

  #16076 opened May 11, 2023

• Merge 23.0 into Dev

  #16078 opened May 12, 2023

• Refactor models enums to eliminate schema dependency on model layer.

  #16080 opened May 12, 2023

• [23.0] Fix BCO export by updating gxformat2

  #16081 opened May 12, 2023

16 Issues closed by 8 people

• Collection jobs record dataset collection elements instead of HDAs

  #15729 closed May 12, 2023

• attribute_value_splitter vs multiple_splitter

  #15635 closed May 11, 2023

• Exception in pulsar job runner and pulsar

  #14043 closed May 11, 2023

• Expand API Test Coverage

  #3853 closed May 10, 2023

• Mergebot

  #5055 closed May 10, 2023

• Small-to-Medium Tasks to Improve Galaxy Packages.

  #8240 closed May 10, 2023

• Tracking Flakey Tests

  #10792 closed May 10, 2023

• Executive summary of 22.01 Release Cycle Testing and Hardening Working Group Goals

  #12398 closed May 10, 2023

• Anonymous session (first time) does not handle tool links properly

  #16063 closed May 10, 2023

• History dataset visibility is reset after viewing collection items.

  #15990 closed May 10, 2023

• Options to build collections missing if all datasets of a history are selected

  #14967 closed May 9, 2023

• Wrong links after setting up 22.05 with prefix

  #16030 closed May 9, 2023

• '/api/upload/resumable_upload/' 404

  #16062 closed May 9, 2023

• Reports: sparklines are not functional

  #15965 closed May 8, 2023

• Using packaging version <22 starts to conflict with other dependencies

  #15898 closed May 8, 2023

• Tool link in tutorial does not always work

  #16002 closed May 5, 2023

6 Issues opened by 6 people

• job_conf.yaml: Tool Shed GUID without the version component unmatched

  #16079 opened May 12, 2023

• Enhancement: Add functionality for direct BAM index retrieval via URL from Galaxy to UCSC

  #16074 opened May 11, 2023

• Galaxy point releases

  #16071 opened May 11, 2023

• E2E Testing for Datatype Chunk Viewing

  #16070 opened May 10, 2023

• Error while creating a local user account by an admin and allow_user_creation is false

  #16067 opened May 10, 2023

• Docker images being pushed with the same tag

  #16053 opened May 5, 2023

34 Unresolved conversations

Sometimes conversations happen on old items that aren’t yet closed. Here is a list of all the Issues and Pull Requests with unresolved conversations.

• OIDC tokens

  #15300 commented on May 12, 2023 • 13 new comments

• FITS data format

  #15905 commented on May 11, 2023 • 8 new comments

• [22.05] fix linter: duplicated label check

  #15933 commented on May 10, 2023 • 7 new comments

• Tooltips / glossary / help button for advanced concepts

  #12934 commented on May 9, 2023 • 4 new comments

• Add WorkflowBox to Activity bar Side Panel

  #15944 commented on May 9, 2023 • 4 new comments

• [RFC] Add History Archiving feature

  #16003 commented on May 12, 2023 • 3 new comments

• Add carbon usage to the job-information page

  #15046 commented on May 12, 2023 • 2 new comments

• Document the use of zipped test data

  #13568 commented on May 10, 2023 • 2 new comments

• Data table directories are walked at startup

  #15307 commented on May 9, 2023 • 1 new comment

• New history refresh prevents push/tab notification of job completions

  #16019 commented on May 9, 2023 • 1 new comment

• Page collection display broken

  #16048 commented on May 9, 2023 • 1 new comment

• Improve Form Drilldown UX

  #16044 commented on May 9, 2023 • 1 new comment

• Export citations exports citations also for deleted datasets

  #15437 commented on May 11, 2023 • 1 new comment

• "Export to BCO" internal server error 500

  #15961 commented on May 12, 2023 • 1 new comment

• galaxy_ext.metadata.set_metadata available as galaxy.metadata in pip installable package

  #14019 commented on May 12, 2023 • 1 new comment

• Make form repeat blocks reordarable

  #14892 commented on May 8, 2023 • 1 new comment

• [WIP] Towards SQLAlchemy 2.0: drop session autocommit setting

  #15421 commented on May 11, 2023 • 1 new comment

• Protection against problematic boolean parameters.

  #15493 commented on May 12, 2023 • 1 new comment

• [WIP] Empower Users to Bring Their Own Storage

  #15875 commented on May 11, 2023 • 1 new comment

• Vueify Select field

  #16010 commented on May 12, 2023 • 1 new comment

• Reports: clicking on individual jobs in reports generates "failed to connect"

  #15966 commented on May 9, 2023 • 0 new comments

• Datatype Chunk Tests

  #15997 commented on May 10, 2023 • 0 new comments

• Expand Selenium Test Coverage

  #3241 commented on May 10, 2023 • 0 new comments

• External Login Flow Improvements

  #14670 commented on May 11, 2023 • 0 new comments

• Add Storage Dashboard visualizations for histories

  #14820 commented on May 9, 2023 • 0 new comments

• Fix resetting metadata on many repositories at once via the shed API

  #14906 commented on May 12, 2023 • 0 new comments

• Python typing fixes for various selenium stuff.

  #15201 commented on May 12, 2023 • 0 new comments

• Fixes for two framework test tools

  #15483 commented on May 10, 2023 • 0 new comments

• Container resolvers: add docs, typing and tests

  #15614 commented on May 10, 2023 • 0 new comments

• Tool Shed 2.0

  #15639 commented on May 12, 2023 • 0 new comments

• Add Galaxy Notification System

  #15663 commented on May 10, 2023 • 0 new comments

• Adding fuzzy search functionality to front end search

  #15855 commented on May 10, 2023 • 0 new comments

• Fix backbone-based data selector to materialize consistent attribute set

  #15981 commented on May 11, 2023 • 0 new comments

• Refactor a few client object store components

  #16051 commented on May 10, 2023 • 0 new comments