Search · data managers

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15	missing_tool_dependencies, readme_files_dict, repository_dependencies,
16	tool_dependencies, valid_tools, workflows, valid_data_managers,
17	invalid_data_managers, data_managers_errors, new_install=False,

15	log = logging.getLogger(__name__)
16
17	SHED_DATA_MANAGER_CONF_XML = """<?xml version="1.0"?>
18	<data_managers>
19	</data_managers>
20	"""
21
22
23	class DataManagerHandler:
24
25	def __init__(self, app):
26	self.app = app

5	<Alert v-else-if="loading" message="Waiting for data" variant="info" />
6	<div v-else-if="dataManagers && !dataManagers.length">
…
8	<h4 class="alert-heading">None installed</h4>
9	You do not currently have any Data Managers installed.
10	</Alert>
11	</div>

21	from galaxy.tool_util.deps.views import DependencyResolversView
22	from galaxy.tool_util.verify import test_data
23	from galaxy.util.dbkeys import GenomeBuilds
24	from galaxy.web_stack import ApplicationStack
…
26	from galaxy.workflow.trs_proxy import TrsProxy
27
28	if TYPE_CHECKING:
29	from galaxy.tools.data import ToolDataTableManager

15	VALUE_TRANSLATION_FUNCTIONS = dict(abspath=os.path.abspath)
16	DEFAULT_VALUE_TRANSLATION_TYPE = 'template'
17
18
19	class DataManagers:
20	data_managers: Dict[str, 'DataManager']
…
23	def __init__(self, app: MinimalManagerApp, xml_filename=None):
24	self.app = app
25	self.data_managers = {}
26	self.managed_data_tables = {}

241	valid_tools=None,
242	workflows=None,
243	valid_data_managers=None)
244	if repository_metadata:
…
338	# Valid Data Managers container
339	if metadata:
340	if 'data_manager' not in exclude and 'data_manager' in metadata:

79	class DataManagersGalaxyTestDriver(driver_util.GalaxyTestDriver):
80	"""Galaxy-style nose TestDriver for testing framework Galaxy tools."""
…
83	"""Build data manager test methods."""
84	import functional.test_data_managers
85	functional.test_data_managers.data_managers = self.app.data_managers

14	log = logging.getLogger(__name__)
15	data_managers = None
16
17
18	class DataManagerToolTestCase(ToolTestCase):
…
23	def build_tests(tmp_dir=None, testing_shed_tools=False, master_api_key=None, user_api_key=None, create_admin=False, user_email=None):
24	"""
25	If the module level variable `data_managers` is set, generate `DataManagerToolTestCase`

22	self.datatypes = []
23	self.folders = []
24	self.invalid_data_managers = []
25	self.invalid_repository_dependencies = []
…
35	self.valid_tools = []
36	self.valid_data_managers = []
37	self.workflows = []
38
39	def contains_folder(self, folder):

1	import unittest
2
3	from galaxy.managers import (
4	collections,
5	hdas,
6	hdcas
7	)
8	from galaxy.managers.datasets import DatasetManager
9	from galaxy.managers.histories import HistoryManager
10	from .base import (