diff --git a/requirements.txt b/requirements.txt index 827a9aaca..a3c58033d 100644 --- a/requirements.txt +++ b/requirements.txt @@ -13,6 +13,6 @@ virtualenv lxml gxformat2>=0.1.1 ephemeris>=0.2.0 -galaxy-lib>=17.5.0 +galaxy-lib>=17.5.1 html5lib>=0.9999999,!=0.99999999,!=0.999999999,!=1.0b10,!=1.0b09 ; python_version == '2.7' cwltool==1.0.20160726135535 ; python_version == '2.7' diff --git a/tests/data/tools/fail_bad_profile_1.xml b/tests/data/tools/fail_bad_profile_1.xml new file mode 100644 index 000000000..302499cb4 --- /dev/null +++ b/tests/data/tools/fail_bad_profile_1.xml @@ -0,0 +1,30 @@ + + select param + $output + ]]> + + + + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/fail_bad_profile_2.xml b/tests/data/tools/fail_bad_profile_2.xml new file mode 100644 index 000000000..67249b68f --- /dev/null +++ b/tests/data/tools/fail_bad_profile_2.xml @@ -0,0 +1,30 @@ + + select param + $output + ]]> + + + + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/fail_bad_profile_3.xml b/tests/data/tools/fail_bad_profile_3.xml new file mode 100644 index 000000000..46411d71d --- /dev/null +++ b/tests/data/tools/fail_bad_profile_3.xml @@ -0,0 +1,30 @@ + + select param + $output + ]]> + + + + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/fail_data_name.xml b/tests/data/tools/fail_data_name.xml new file mode 100644 index 000000000..33af10a07 --- /dev/null +++ b/tests/data/tools/fail_data_name.xml @@ -0,0 +1,31 @@ + + select param + $output + ]]> + + + + + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/fail_name_mismatch.xml b/tests/data/tools/fail_name_mismatch.xml new file mode 100644 index 000000000..c48ba3e08 --- /dev/null +++ b/tests/data/tools/fail_name_mismatch.xml @@ -0,0 +1,30 @@ + + select param + $output + ]]> + + + + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/fail_output_collection_name_mismatch.xml b/tests/data/tools/fail_output_collection_name_mismatch.xml new file mode 100644 index 000000000..263613ee7 --- /dev/null +++ b/tests/data/tools/fail_output_collection_name_mismatch.xml @@ -0,0 +1,36 @@ + + \$1 ".tabular" }' $input1 + ]]> + + + + + + + + + + + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/fail_output_collection_name_missing.xml b/tests/data/tools/fail_output_collection_name_missing.xml new file mode 100644 index 000000000..ef4ef7598 --- /dev/null +++ b/tests/data/tools/fail_output_collection_name_missing.xml @@ -0,0 +1,36 @@ + + \$1 ".tabular" }' $input1 + ]]> + + + + + + + + + + + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/ok_select_param.xml b/tests/data/tools/ok_select_param.xml index e51a77f90..8a4f849dd 100644 --- a/tests/data/tools/ok_select_param.xml +++ b/tests/data/tools/ok_select_param.xml @@ -1,8 +1,8 @@ select param - + $output - + ]]> diff --git a/tests/data/tools/ok_test_assert_command.xml b/tests/data/tools/ok_test_assert_command.xml new file mode 100644 index 000000000..56d72387e --- /dev/null +++ b/tests/data/tools/ok_test_assert_command.xml @@ -0,0 +1,26 @@ + + copies a dataset + + cp $input $output + + + + + + + + + + + + + + + + + Some Awesome Help! + + + 10.1101/014043 + + diff --git a/tests/data/tools/ok_test_output_collections.xml b/tests/data/tools/ok_test_output_collections.xml index bb34a28ee..21f9b34c9 100644 --- a/tests/data/tools/ok_test_output_collections.xml +++ b/tests/data/tools/ok_test_output_collections.xml @@ -1,7 +1,7 @@ - + \$1 ".tabular" }' $input1 - + ]]>