diff --git a/HISTORY.rst b/HISTORY.rst index 6e1fc21a6..9672dba82 100644 --- a/HISTORY.rst +++ b/HISTORY.rst @@ -9,7 +9,52 @@ History 0.39.0.dev0 --------------------- - +* Implement documentation and examples for Conda-based dependency development (under + "Advanced" topics). + `Pull Request 642`_, `Pull Request 643`_ +* Implement documentation and examples for container-based dependency development (under + "Advanced" topics). + 0a1abfe_ +* Implement a ``planemo conda_search`` command for searching best practice channels + from the command line. + `Pull Request 642`_ +* Allow Planemo to work with locally built Conda packages using the ``--conda_use_local`` + command. + `Pull Request 643`_, `Issue 620`_ +* Implement an ``open`` (or just ``o``) command to quickly open the last test results + (or any file if supplied). `Pull Request 641`_ +* Linting improvements and fixes due to `galaxy-lib`_ update. + * WARN on test output names not found or not matching. + * INFO correct information about stdio if profile version is found. + * WARN if profile version is incorrect. + * INFO profile version + * Fix ``assert_command`` not detected as a valid test (fixes `Issue 260`_). +* Have ``lint --conda_requirements`` check that at least one actual requirement is found. + 6638caa_ +* Allow ``conda_install`` to work with packages as well as just tools. + 8faf661_ +* Add ``--global`` option to conda_install to install requirements into global Conda setup + instead of using an environment. + 8faf661_ +* Implement ``planemo lint --biocontainer`` that checks that a tool has an available BioContainer + registered. + 0a1abfe_ +* Add more options and more documentation to the ``planemo mull`` command. + 0a1abfe_ +* Hack around a bug in Conda 4.2 that makes it so ``planemo mull`` doesn't work out of the box on + Mac OS X. + 0a1abfe_ +* Various fixes for the command ``conda_env``. `Pull Request 640`_ +* Improved command help - both formatting and content. `Pull Request 639`_ +* Implement a ``--no_dependency_resolution`` option disabling conda dependency + resolver. + `Pull Request 635`_, `Issue 633`_ +* Tests for new linting logic. `Pull Request 638`_ +* Fix bug where tool IDs needs to be lowercase for the shed (thanks to + `@bgruening`_). + `Pull Request 649`_ +* Update seqtk version targetted by intro docs. e343b67_ +* Various other Conda usability improvements. `Pull Request 634`_ --------------------- 0.38.1 (2017-02-06) @@ -997,6 +1042,21 @@ History tools - and more experimental features involving Docker and Homebrew. 7d07782_ .. github_links +.. _0a1abfe: https://github.com/galaxyproject/planemo/commit/0a1abfe +.. _Pull Request 649: https://github.com/galaxyproject/planemo/pull/649 +.. _Issue 620: https://github.com/galaxyproject/planemo/issues/620 +.. _Pull Request 643: https://github.com/galaxyproject/planemo/pull/643 +.. _Pull Request 642: https://github.com/galaxyproject/planemo/pull/642 +.. _Pull Request 641: https://github.com/galaxyproject/planemo/pull/641 +.. _Pull Request 639: https://github.com/galaxyproject/planemo/pull/639 +.. _Pull Request 635: https://github.com/galaxyproject/planemo/pull/635 +.. _Issue 633: https://github.com/galaxyproject/planemo/issues/633 +.. _Issue 260: https://github.com/galaxyproject/planemo/issues/260 +.. _Pull Request 638: https://github.com/galaxyproject/planemo/pull/638 +.. _6638caa: https://github.com/galaxyproject/planemo/commit/6638caa +.. _8faf661: https://github.com/galaxyproject/planemo/commit/8faf661 +.. _e343b67: https://github.com/galaxyproject/planemo/commit/e343b67 +.. _Pull Request 634: https://github.com/galaxyproject/planemo/pull/634 .. _84ebc1f: https://github.com/galaxyproject/planemo/commit/84ebc1f .. _03c9658: https://github.com/galaxyproject/planemo/commit/03c9658 .. _08c067c: https://github.com/galaxyproject/planemo/commit/08c067c