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Another pass at CWL tutorial (and corresponding simplifying user experience for CWL) #837

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merged 1 commit into from May 22, 2018

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jmchilton commented May 21, 2018

  • Default to using cwltool for the testing engine if all artifacts are CWL (can force old Galaxy mode with --engine galaxy).
  • Build better CWL tests with tool_init so an actual job file is generated and can be demonstrated in the documentation.
  • Update test format output notations to allow using either CWL-like (path/location) attributes or Galaxy-like (file) attributes.
  • Fill out more intro to CWL documentation to show this stuff off.
  • Remove unwanted metadata from example tools.

@jmchilton jmchilton force-pushed the jmchilton:easier_cwl branch from 2c527a5 to 2433234 May 22, 2018

Doc and CWL improvements for another pass documentation.
- Default to using cwltool for the testing engine if all artifacts are CWL (can force old Galaxy mode with --engine galaxy).
- Build better CWL tests with tool_init so an actual job file is generated and can be demonstrated in the documentation.
- Update test format output notations to allow using either CWL-like (path/location) attributes or Galaxy-like (file) attributes.
- Fill out more intro to CWL documentation to show this stuff off.
- Remove unwanted metadata from example tools.

@jmchilton jmchilton force-pushed the jmchilton:easier_cwl branch from 2433234 to 0d0305e May 22, 2018

@jmchilton jmchilton merged commit 92a79de into galaxyproject:master May 22, 2018

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