Bug: Trinotate (Galaxy Version 3.2.1)

[jennaj]

MTS: https://toolshed.g2.bx.psu.edu/repository?repository_id=9e9028e2044577db

Tool/version: Trinotate (Galaxy Version 3.2.1)

Severs impacted: usegalaxy.org, usegalaxy.eu, probably everywhere else

Problem: Failing to retrieve an external dataset -- source changed the path, so the Galaxy conda environment needs an update OR the underlying tool binary needs an update

Example error:

Error, cmd: wget “ftp://ftp.geneontology.org/pub/go/external2go/pfam2go” died with ret 1024 at /usr/local/tools/_conda/envs/mulled-v1-d301214ea0391aec86b2f63c2c1ac14ef0598be5ae4d143b7405cc0414beaa71/lib/site_perl/5.26.2/Pipeliner.pm line 102.

Errors reported at:

• https://help.galaxyproject.org/t/trinotate-error-resulting-in-the-job-creating-this-dataset-has-been-resubmitted/6187/9
• https://gitter.im/galaxyproject/Lobby?at=61141480f31bc0605a5919a1

[bernt-matthias]

Duplicate of #3874 and #3555