Add DeepVariant tool

[gallardoalba]

FOR CONTRIBUTOR:

• - I have read the CONTRIBUTING.md document and this tool is appropriate for the tools-iuc repo.
• - License permits unrestricted use (educational + commercial)
• - This PR adds a new tool or tool collection
• - This PR updates an existing tool or tool collection
• - This PR does something else (explain below)

[bgruening]

Awesome, thanks @gallardoalba!

[mvdbeek]

@bgruening I think we should have had a discussion first on whether we will merge container-only tools and under which conditions we will do that, and whether there need to be improvements in Galaxy and the TS interface on how admins are alerted to this fact. There is https://anaconda.org/bioconda/deepvariant, was there a reason this couldn't be used ?

[gallardoalba]

@bgruening I think we should have had a discussion first on whether we will merge container-only tools and under which conditions we will do that, and whether there need to be improvements in Galaxy and the TS interface on how admins are alerted to this fact. There is https://anaconda.org/bioconda/deepvariant, was there a reason this couldn't be used ?

I just used it because it is the developer's recommendation https://github.com/google/deepvariant#how-to-run-deepvariant

[bgruening]

There is https://anaconda.org/bioconda/deepvariant, was there a reason this couldn't be used?

This package has multiple problems and no tests: https://github.com/bioconda/bioconda-recipes/blob/master/recipes/deepvariant/meta.yaml
The real show-stopper is that it does not compile under older glibc and thus does not fulfill the usual requirements.