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Update GATK4 Mutect2 #345

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jennaj opened this issue Nov 1, 2021 · 0 comments
Open

Update GATK4 Mutect2 #345

jennaj opened this issue Nov 1, 2021 · 0 comments

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@jennaj
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@jennaj jennaj commented Nov 1, 2021

Please update to the current version at usegalaxy.org

GATK4 Mutect2 - Call somatic SNVs and indels via local assembly of haplotypes (Galaxy Version 4.1.7.0+galaxy1)

cc @davebx

The updated version will address reported usage issues, example: https://help.galaxyproject.org/t/building-an-indexed-genome-file-for-gatk-tools/4529/

Workaround: Run the tool at usegalaxy.eu instead

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