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Update Circos tool suite at usegalaxy.org #346

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jennaj opened this issue Nov 3, 2021 · 1 comment
Open

Update Circos tool suite at usegalaxy.org #346

jennaj opened this issue Nov 3, 2021 · 1 comment

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@jennaj
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@jennaj jennaj commented Nov 3, 2021

Workaround for End-Users:

Please try the latest version of the tool at usegalaxy.eu: Circos visualizes data in a circular layout (Galaxy Version 0.69.8+galaxy8 0.69.8+galaxy10). Avoid earlier versions if using "Circos Presets" for Karyotype.

Problem reported/confirmed 10/27/21
Galaxy Help post: https://help.galaxyproject.org/t/circos-functional-on-usegalaxy-eu-but-not-usegalaxy-org/6972

Test histories (GTN test data)

cc @davebx

MTS: https://toolshed.g2.bx.psu.edu/view/iuc/circos/7f13dc906cb9

More context

  • The prior version 0.69.8+galaxy7 works fine at EU but not at ORG, so there is probably more going on than just the need to update to the latest wrapper. Maybe the dependencies for 0.69.8+galaxy8 and 0.69.8+galaxy7 are the same (?) and updating to the latest runtime container environment will address both. Perhaps @hexylena has some insight around that.
  • Upgrading to 0.69.8+galaxy10 should resolve all known issues. See tool repo history here: https://github.com/galaxyproject/tools-iuc/commits/master/tools/circos
@jennaj
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@jennaj jennaj commented Nov 30, 2021

Current version is now: 0.69.8+galaxy10

MTS: https://toolshed.g2.bx.psu.edu/view/iuc/circos/290a11559985

Note: Includes at least one other distinct bug fix ("Chrom presets" wasn't functional anywhere, any version version 0.69.8+galaxy7 or later)
circos_Presets

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