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python3 fixes for ROIpack

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alexhuth committed Aug 8, 2019
1 parent b7d5878 commit 544ef2fdca7b10945959ce377fd77410e91146a0
Showing with 8 additions and 8 deletions.
  1. +8 −8 cortex/
@@ -7,13 +7,13 @@

import networkx as nx

from cortex import db
from svgoverlay import get_overlay, _make_layer, _find_layer, parser
from . import db
from .svgoverlay import get_overlay, _make_layer, _find_layer, parser
from lxml import etree
from dataset import Vertex
from polyutils import Surface, boundary_edges
from utils import add_roi
import quickflat
from .dataset import Vertex
from .polyutils import Surface, boundary_edges
from .utils import add_roi
from . import quickflat

class ROIpack(object):
def __init__(self, subject, roifile):
@@ -160,7 +160,7 @@ def to_svg(self, open_inkscape=False, filename=None):
svgpath.attrib["d"] = path
#svgpath.attrib["sodipodi:nodetypes"] = "c" * len(pts)

with open(svgroipack.svgfile, "w") as xml:
with open(svgroipack.svgfile, "wb") as xml:
xml.write(etree.tostring(svg, pretty_print=True))

@@ -179,7 +179,7 @@ def poly_graph(surf):
#ii,jj = np.vstack(edges.values()).T
#polymat = sparse.coo_matrix((np.ones((nedges,)), (ii, jj)), shape=[len(self.polys)]*2)
polygraph = nx.Graph()
polygraph.add_edges_from(((p[0], p[1], dict(verts=k)) for k,p in edges.iteritems()))
polygraph.add_edges_from(((p[0], p[1], dict(verts=k)) for k,p in edges.items()))
return polygraph

def get_boundary(surf, vertices, remove_danglers=False):

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