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automating annotation imports #320
this builds on (closed) issue #312
i would like to be able to easily import a freesurfer annotation file to be used in the
i have used the pycortex tools to loop through all the ROIs in an annotation file (e.g., aparc, HCPMMP1) and figure out the border of the label, concatenating across hemispheres. i can load this label outline into inkscape with
does anybody know of a good way to turn the label border
my code is given below, which again, builds upon #312.
thanks so much for the amazing software. i am just getting acquainted and it is fantastic.
i was able to semi-automate this using the bitmap tracing tool in inkscape. it still takes some time to go through all of the ROIs but at least saves the effort of hand-tracing. it doesn't really help to have the border images i computed :-)
if nobody has other thoughts, this can be closed. thanks,