Custom code used for the computational analyses in Mohana et al. manuscript "Chromosome-level organization of the regulatory genome in the Drosophila nervous system".
The software and some additional processed data are provided "as is", in the hope that they will be useful, but without warranty of any kind. Please refer to the subdirectories:
loop_calling– for meta-loop calling (authored by Julien Dorier),loop_conservation– for the analysis of evolutionary conservation of meta-loops (authored by Aleksander Jankowski),scATACseq– for scATAC-seq processing pipeline (authored by Aleksander Jankowski),scRNAseq– for scRNA-seq processing pipeline (authored by Marion Leleu).
In case of any questions, please contact Aleksander Jankowski aleksander.jankowski@uw.edu.pl.