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data bump to 2016-09-21 version. Sep 23, 2016
tools bump to 2016-09-21 version. Sep 23, 2016
Monitor.pl bump to 2016-09-21 version. Sep 23, 2016
README.md
Software_Setup.sh bump to 2016-09-21 version. Sep 23, 2016
bsmap.configure bump to 2016-09-21 version. Sep 23, 2016

README.md

############################################

Important notice

############################################

The latest version of SMAPdigger has been moved to

https://github.com/hellbelly/SMAPdigger

Several bugs have been fixed and the architecture has been improved in the latest version.

SMAPdigger

System requirement

smapDigger works on 64-bit Unix (Linux, Ubuntu, Mac OS, etc) based systems.

Hardware requirements

At least one computing node equipped with at least 10 GB Memory

Software requirements

GCC 4.6.0 or higher
Perl 5.16.3 or higher
Java 1.6.0 or higher
zlib 1.2.8 or higher

Step 1 (Setup softwares)

  1. cd [smapDigger root directory]
  2. Execute command "chmod -R 755 ./"
  3. Execute command "./Software_Setup.sh"

Step 2 (Configure program)

1, modify configuration file configure

2, Execute script "perl ./Monitor.pl -c configure -o [Output path]"

Step 3 (Run program)

1, cd [Output path]

sh RRBS_Run.sh