garrettjstevens

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Garrett Stevens garrettjstevens

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Developer @GMOD JBrowse and Apollo

9 followers · 3 following

UC Berkeley
Utah
17:41 (UTC -06:00)
https://garrettjstevens.github.io/

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Pinned

bioinfo-intro-python Public

Jupyter notebook and slides used to introduce some Python enthusiasts to the field of bioinformatics.

HTML 1
garrettjstevens.github.io Public

My GitHub Pages site

Ruby
jbrowse-utils Public

A set of Python utilities for formatting data to be used with JBrowse

Python 1
vcf-stats Public

A collection of tools related to bcftools stats

Python

428 contributions in the last year

Learn how we count contributions

Activity overview

Contributed to GMOD/Apollo3, GMOD/jbrowse-components, GMOD/Apollo and 10 other repositories

Contribution activity

March 2023

Created 16 commits in 1 repository

GMOD/Apollo3 16 commits

Created a pull request in GMOD/jbrowse-components that received 4 comments

Make track selector filter text persist across refresh

This is a small change that proposes the filter text in the Hierarchical Track Selector be stored in regular MST state instead of volatile state. T…

+1 −1 • 4 comments

Opened 1 other pull request in 1 repository

GMOD/jbrowse-components 1 open

Add local OAuth server for testing Mar 13

Reviewed 1 pull request in 1 repository

GMOD/jbrowse-components 1 pull request

Improve visibility of SNPs on alignments track Mar 13

Created an issue in GMOD/jbrowse-components that received 3 comments

Missing/incorrect selected feature highlights in synteny view when zooming

Reported by Matt Berriman @mberriman To reproduce: Go to https://s3.amazonaws.com/jbrowse.org/code/jb2/main/index.html?config=test_data%2Fconfig_s…

3 comments

Opened 5 other issues in 2 repositories

GMOD/Apollo3 4 open

Add initial LocalFileDriver support Mar 15
Investigate assembly loading timeouts Mar 10
Remove CopyFeatureChange and replace with AddFeatureChange Mar 3
Create GetFeaturesOperation Mar 2

GMOD/jbrowse-components 1 open

Feature request: center synteny feature Mar 13