diff --git a/cnv_somatic_panel_workflow.wdl b/cnv_somatic_panel_workflow.wdl index f4dfcce..5c11367 100644 --- a/cnv_somatic_panel_workflow.wdl +++ b/cnv_somatic_panel_workflow.wdl @@ -105,7 +105,7 @@ workflow CNVSomaticPanelWorkflow { preemptible_attempts = preemptible_attempts } - if (select_first([do_explicit_gc_correction, false])) { + if (select_first([do_explicit_gc_correction, true])) { call CNVTasks.AnnotateIntervals { input: intervals = PreprocessIntervals.preprocessed_intervals,