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read_counter use binSize wildcard in log [ci skip] #26

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gavinha committed Aug 3, 2018
1 parent dae6562 commit 1682cf421b937aed8c38351b770a38c9cf1414fd
Showing with 1 addition and 1 deletion.
  1. +1 −1 scripts/snakemake/ichorCNA.snakefile
@@ -20,7 +20,7 @@ rule read_counter:
resources:
mem=4
log:
"logs/readDepth/{samples}.log"
"logs/readDepth/{samples}.bin{binSize}.log"
shell:
"{params.readCounter} {input} -c {params.chrs} -w {params.binSize} -q {params.qual} > {output} 2> {log}"

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