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ploidy2 path fix

Typo in ploidyRun2 path corrected. Fixes #65
Thanks to @aleighgreen for finding this typo
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gavinha committed Feb 7, 2019
1 parent ea4cdd6 commit 8fbcab53dd4ade836c2229cd47e9c2968742ad49
Showing with 2 additions and 2 deletions.
  1. +2 −2 scripts/snakemake/TitanCNA.snakefile
@@ -71,7 +71,7 @@ rule selectSolution:
"logs/titan/selectSolution.log"
shell:
"""
ploidyRun2=results/titan/titanCNA_ploidy2/
ploidyRun2=results/titan/hmm/titanCNA_ploidy2/
if [ -d results/titan/hmm/titanCNA_ploidy3/ ]; then
ploidyRun3=results/titan/hmm/titanCNA_ploidy3/
else
@@ -84,4 +84,4 @@ rule selectSolution:
fi
Rscript {params.solutionRscript} --ploidyRun2 $ploidyRun2 --ploidyRun3 $ploidyRun3 --ploidyRun4 $ploidyRun4 --threshold {params.threshold} --outFile {output} > {log} 2> {log}
"""


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