Skip to content
Browse files

switched to GRanges update

  • Loading branch information...
gavinha committed May 30, 2019
1 parent d8736da commit 9c45b4eb9e2e3a5cfd1e1be245b767186d6972d3
Showing with 8 additions and 4 deletions.
  1. +8 −4
@@ -10,7 +10,7 @@ Ha, G., et al. (2014). [TITAN: Inference of copy number architectures in clonal
Gavin Ha
Fred Hutchinson Cancer Research Center
contact: <> or <>
Date: January 2, 2019
Date: May 30, 2019
Website: [](

## Table of Contents
@@ -23,16 +23,20 @@ Website: [](
* [License](#software-license)

## Links
Snakemake Workflow:
**Snakemake Workflow:**
**10X Snakemake Workflow:**
Google Groups:!forum/titancna
TitanCNA website:
Publication in Genome Research:

## News
(See [NEWS](NEWS) for previous version notes)

### May 30, 2019 - TitanCNA version 1.23.1
Addressed the issue of `RangedData` being deprecated by converting code to use `GRanges` from the `GenomicRanges` package.
New or modified functions:
- `wigToGRanges`: to load WIG files and store in `GRanges` object.
- `correctIntegerCN()`: performs allelic copy number (major/minor CN) adjustment.

### August 9, 2018
Improved parameter inference by handling errors and allowing EM to continue until convergence. This fixes runs that previously would fail because samples had very low tumor content.

0 comments on commit 9c45b4e

Please sign in to comment.
You can’t perform that action at this time.