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Merge pull request #82 from annahoge/patch-1

Made cp recursive.
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gavinha committed Dec 19, 2019
2 parents 97413f0 + 8173730 commit c4f94ee10e74e83869c9585501a3dacfee3464cc
Showing with 1 addition and 1 deletion.
  1. +1 −1 scripts/snakemake/TitanCNA.snakefile
@@ -113,7 +113,7 @@ rule copyOptSolution:
for i in `cut -f11 {input} | grep -v "path"`;
do
echo -e "Copying $curDir/${{i}} to {output}"
cp ${{curDir}}/${{i}}* {output}
cp -r ${{curDir}}/${{i}}* {output}
done
"""

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