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seqlevels bug fi

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gavinha committed Sep 27, 2018
1 parent 9d36ea0 commit 7dfeaa9a91ad1584222e85fba964a9eb8f0e9a77
Showing with 1 addition and 1 deletion.
  1. +1 −1 code/combineTITAN-ichor.R
@@ -84,7 +84,7 @@ setnames(ichor.cn, c("chr", "start", paste0(id,".copy.number"), paste0(id,".even
## get chromosome style
titan$Chromosome <- as.character(titan$Chromosome)
titan.cn$Chr <- as.character(titan.cn$Chr)
genomeStyle <- seqlevelsStyle()[1]
genomeStyle <- seqlevelsStyle(titan.cn$Chr)[1]
chrs <- c(1:22, "X")
seqlevelsStyle(chrs) <- genomeStyle

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